avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Atf4 | mm10_v2_chr15_+_80255184_80255263 | 0.47 | 3.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_148399901 Show fit | 10.72 |
ENSMUST00000048116.8
|
solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 |
|
chr16_-_36367623 Show fit | 10.37 |
ENSMUST00000096089.2
|
cDNA sequence BC100530 |
|
chr2_+_148798785 Show fit | 9.39 |
ENSMUST00000028931.3
ENSMUST00000109947.1 |
cystatin 8 (cystatin-related epididymal spermatogenic) |
|
chr14_-_56102458 Show fit | 9.36 |
ENSMUST00000015583.1
|
cathepsin G |
|
chr7_-_3502465 Show fit | 8.07 |
ENSMUST00000065703.7
|
T cell-interacting, activating receptor on myeloid cells 1 |
|
chr16_-_36334330 Show fit | 7.43 |
ENSMUST00000114850.2
|
cDNA sequence BC1179090 |
|
chr7_+_78913436 Show fit | 7.33 |
ENSMUST00000121645.1
|
interferon-stimulated protein |
|
chr7_+_78914216 Show fit | 7.31 |
ENSMUST00000120331.2
|
interferon-stimulated protein |
|
chr7_+_78913401 Show fit | 6.91 |
ENSMUST00000118867.1
|
interferon-stimulated protein |
|
chr7_+_78913765 Show fit | 6.82 |
ENSMUST00000038142.8
|
interferon-stimulated protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.7 | 28.4 | GO:0000738 | DNA catabolic process, exonucleolytic(GO:0000738) |
3.9 | 11.7 | GO:0006592 | ornithine biosynthetic process(GO:0006592) |
0.7 | 10.7 | GO:0015809 | arginine transport(GO:0015809) |
0.1 | 10.4 | GO:0016579 | protein deubiquitination(GO:0016579) |
1.0 | 9.4 | GO:0070944 | neutrophil mediated killing of bacterium(GO:0070944) |
0.7 | 6.6 | GO:0036371 | protein localization to M-band(GO:0036309) protein localization to T-tubule(GO:0036371) |
0.1 | 6.3 | GO:0007189 | adenylate cyclase-activating G-protein coupled receptor signaling pathway(GO:0007189) |
1.2 | 6.0 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
0.1 | 5.7 | GO:0006826 | iron ion transport(GO:0006826) |
0.0 | 5.7 | GO:2000117 | negative regulation of cysteine-type endopeptidase activity(GO:2000117) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 28.3 | GO:0015030 | Cajal body(GO:0015030) |
0.1 | 10.7 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.0 | 10.1 | GO:0009986 | cell surface(GO:0009986) |
0.0 | 9.2 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 6.6 | GO:0031430 | M band(GO:0031430) |
0.0 | 6.0 | GO:0000793 | condensed chromosome(GO:0000793) |
0.0 | 5.4 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 4.0 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
0.1 | 3.6 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.0 | 3.2 | GO:0005882 | intermediate filament(GO:0005882) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.1 | 28.4 | GO:0008859 | exoribonuclease II activity(GO:0008859) |
3.9 | 11.7 | GO:0017084 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) delta1-pyrroline-5-carboxylate synthetase activity(GO:0017084) amino acid kinase activity(GO:0019202) |
1.3 | 10.7 | GO:0015181 | arginine transmembrane transporter activity(GO:0015181) |
0.1 | 10.4 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) |
0.0 | 9.0 | GO:0008201 | heparin binding(GO:0008201) |
0.0 | 6.8 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 6.6 | GO:0030507 | spectrin binding(GO:0030507) |
0.0 | 6.0 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.5 | 5.7 | GO:0015093 | ferrous iron transmembrane transporter activity(GO:0015093) |
0.0 | 4.9 | GO:0005179 | hormone activity(GO:0005179) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.0 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.1 | 7.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.0 | 4.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 2.8 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.1 | 2.1 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.0 | 2.0 | PID REELIN PATHWAY | Reelin signaling pathway |
0.1 | 1.9 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 1.8 | ST INTERLEUKIN 4 PATHWAY | Interleukin 4 (IL-4) Pathway |
0.0 | 1.7 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 29.9 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.3 | 14.0 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.5 | 13.2 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.4 | 9.4 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.1 | 7.0 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.3 | 6.3 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.1 | 6.3 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.1 | 4.2 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 3.7 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.0 | 3.0 | REACTOME CELL SURFACE INTERACTIONS AT THE VASCULAR WALL | Genes involved in Cell surface interactions at the vascular wall |