avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E4f1 | mm10_v2_chr17_-_24455265_24455345 | -0.28 | 9.9e-02 | Click! |
Atf7 | mm10_v2_chr15_-_102529025_102529025 | 0.06 | 7.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_89459118 Show fit | 3.63 |
ENSMUST00000029564.5
|
phosphomevalonate kinase |
|
chr3_+_89459325 Show fit | 2.85 |
ENSMUST00000107410.1
|
phosphomevalonate kinase |
|
chr11_-_78165521 Show fit | 2.35 |
ENSMUST00000017530.3
|
TNF receptor associated factor 4 |
|
chr13_+_8885501 Show fit | 2.34 |
ENSMUST00000169314.2
|
isopentenyl-diphosphate delta isomerase |
|
chr4_-_134245579 Show fit | 2.02 |
ENSMUST00000030644.7
|
zinc finger protein 593 |
|
chr15_-_84105662 Show fit | 1.93 |
ENSMUST00000082365.5
|
sulfotransferase family 4A, member 1 |
|
chr2_+_155276297 Show fit | 1.91 |
ENSMUST00000029128.3
|
microtubule-associated protein 1 light chain 3 alpha |
|
chr17_-_26508463 Show fit | 1.87 |
ENSMUST00000025025.6
|
dual specificity phosphatase 1 |
|
chr13_-_23761223 Show fit | 1.80 |
ENSMUST00000102964.2
|
histone cluster 1, H4a |
|
chr11_+_102393403 Show fit | 1.61 |
ENSMUST00000107105.2
ENSMUST00000107102.1 ENSMUST00000107103.1 ENSMUST00000006750.7 |
RUN domain containing 3A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 8.0 | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287) |
0.9 | 3.6 | GO:0009240 | isopentenyl diphosphate biosynthetic process(GO:0009240) isopentenyl diphosphate metabolic process(GO:0046490) |
0.6 | 3.6 | GO:0006363 | termination of RNA polymerase I transcription(GO:0006363) |
0.2 | 3.3 | GO:0045653 | negative regulation of megakaryocyte differentiation(GO:0045653) |
0.8 | 3.0 | GO:0045903 | positive regulation of translational fidelity(GO:0045903) |
0.1 | 2.4 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
0.2 | 2.3 | GO:0090073 | positive regulation of protein homodimerization activity(GO:0090073) |
0.4 | 2.2 | GO:0045905 | translational frameshifting(GO:0006452) positive regulation of translational termination(GO:0045905) |
0.2 | 2.2 | GO:0006995 | cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562) |
0.2 | 2.1 | GO:0021942 | radial glia guided migration of Purkinje cell(GO:0021942) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.4 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 6.3 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.1 | 5.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.2 | 3.6 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.1 | 3.2 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.1 | 3.0 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
0.0 | 2.8 | GO:0005844 | polysome(GO:0005844) |
0.2 | 2.6 | GO:0030008 | TRAPP complex(GO:0030008) |
0.2 | 2.5 | GO:0072546 | ER membrane protein complex(GO:0072546) |
0.8 | 2.3 | GO:0043224 | nuclear SCF ubiquitin ligase complex(GO:0043224) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.7 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 6.5 | GO:0016776 | phosphotransferase activity, phosphate group as acceptor(GO:0016776) |
0.9 | 3.6 | GO:0004452 | isopentenyl-diphosphate delta-isomerase activity(GO:0004452) |
0.2 | 3.6 | GO:0001054 | RNA polymerase I activity(GO:0001054) |
0.5 | 3.0 | GO:1990932 | 5.8S rRNA binding(GO:1990932) |
0.1 | 2.9 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.1 | 2.8 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
0.0 | 2.6 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.3 | 2.3 | GO:0019788 | NEDD8 transferase activity(GO:0019788) |
0.1 | 2.2 | GO:0017070 | U6 snRNA binding(GO:0017070) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.8 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
0.0 | 2.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 2.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 1.7 | ST ADRENERGIC | Adrenergic Pathway |
0.0 | 1.4 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.0 | 1.3 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 1.0 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 0.8 | PID MYC PATHWAY | C-MYC pathway |
0.1 | 0.7 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.0 | 0.5 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 12.2 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 6.4 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 5.1 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 3.9 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.0 | 2.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.1 | 2.2 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
0.1 | 1.9 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.0 | 1.9 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
0.1 | 1.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.1 | 1.2 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |