avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Bhlhe40 | mm10_v2_chr6_+_108660772_108660874 | 0.59 | 1.4e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chrX_-_136068236 Show fit | 4.33 |
ENSMUST00000049130.7
|
brain expressed X-linked 2 |
|
chrX_-_136203637 Show fit | 3.93 |
ENSMUST00000151592.1
ENSMUST00000131510.1 ENSMUST00000066819.4 |
transcription elongation factor A (SII)-like 5 |
|
chrX_+_136138996 Show fit | 3.54 |
ENSMUST00000116527.1
|
brain expressed gene 4 |
|
chrX_+_136270253 Show fit | 3.50 |
ENSMUST00000178632.1
ENSMUST00000053540.4 |
nerve growth factor receptor (TNFRSF16) associated protein 1 |
|
chr4_+_148039097 Show fit | 2.90 |
ENSMUST00000141283.1
|
5,10-methylenetetrahydrofolate reductase |
|
chr4_+_148039035 Show fit | 2.89 |
ENSMUST00000097788.4
|
5,10-methylenetetrahydrofolate reductase |
|
chrX_+_136270302 Show fit | 2.53 |
ENSMUST00000113112.1
|
nerve growth factor receptor (TNFRSF16) associated protein 1 |
|
chrX_-_135210672 Show fit | 2.31 |
ENSMUST00000033783.1
|
transcription elongation factor A (SII)-like 6 |
|
chr2_+_30286383 Show fit | 1.92 |
ENSMUST00000064447.5
|
nucleoporin 188 |
|
chr9_-_97111117 Show fit | 1.64 |
ENSMUST00000085206.4
|
solute carrier family 25, member 36 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 5.8 | GO:0070829 | heterochromatin maintenance(GO:0070829) |
0.0 | 4.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
0.6 | 3.2 | GO:0090521 | glomerular visceral epithelial cell migration(GO:0090521) |
0.7 | 2.2 | GO:0099578 | regulation of translation at synapse, modulating synaptic transmission(GO:0099547) regulation of translation at postsynapse, modulating synaptic transmission(GO:0099578) positive regulation of intracellular transport of viral material(GO:1901254) |
0.3 | 1.6 | GO:0072531 | pyrimidine-containing compound transmembrane transport(GO:0072531) |
0.1 | 1.2 | GO:0006610 | ribosomal protein import into nucleus(GO:0006610) |
0.0 | 1.2 | GO:0038092 | nodal signaling pathway(GO:0038092) |
0.0 | 1.2 | GO:0015804 | neutral amino acid transport(GO:0015804) |
0.2 | 1.1 | GO:0072429 | response to intra-S DNA damage checkpoint signaling(GO:0072429) |
0.0 | 0.9 | GO:0036295 | cellular response to increased oxygen levels(GO:0036295) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.2 | GO:0044611 | nuclear pore inner ring(GO:0044611) |
0.5 | 2.2 | GO:1902737 | viral replication complex(GO:0019034) dendritic filopodium(GO:1902737) |
0.2 | 1.1 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
0.1 | 0.8 | GO:0005662 | DNA replication factor A complex(GO:0005662) |
0.2 | 0.7 | GO:0030905 | retromer, tubulation complex(GO:0030905) |
0.0 | 0.6 | GO:0000242 | pericentriolar material(GO:0000242) |
0.0 | 0.4 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
0.0 | 0.4 | GO:0005641 | nuclear envelope lumen(GO:0005641) |
0.0 | 0.4 | GO:0097038 | perinuclear endoplasmic reticulum(GO:0097038) |
0.0 | 0.4 | GO:0044665 | MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | GO:0050699 | WW domain binding(GO:0050699) |
1.9 | 5.8 | GO:0004489 | methylenetetrahydrofolate reductase (NAD(P)H) activity(GO:0004489) |
0.1 | 4.3 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
0.1 | 3.2 | GO:0017056 | structural constituent of nuclear pore(GO:0017056) |
0.3 | 2.2 | GO:0033592 | RNA strand annealing activity(GO:0033592) |
0.3 | 1.6 | GO:0008321 | Ral guanyl-nucleotide exchange factor activity(GO:0008321) |
0.1 | 1.6 | GO:0015215 | nucleotide transmembrane transporter activity(GO:0015215) |
0.0 | 1.2 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
0.0 | 1.2 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
0.1 | 1.1 | GO:0008821 | crossover junction endodeoxyribonuclease activity(GO:0008821) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.0 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 1.0 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.7 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
0.0 | 0.5 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.0 | REACTOME CELL DEATH SIGNALLING VIA NRAGE NRIF AND NADE | Genes involved in Cell death signalling via NRAGE, NRIF and NADE |
0.1 | 5.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 3.2 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |
0.0 | 1.2 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.0 | 1.2 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.0 | 1.1 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.1 | 0.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.0 | 0.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 0.4 | REACTOME G BETA GAMMA SIGNALLING THROUGH PLC BETA | Genes involved in G beta:gamma signalling through PLC beta |
0.0 | 0.1 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |