avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Cdx2 | mm10_v2_chr5_-_147307264_147307281 | -0.35 | 3.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_131032061 Show fit | 8.97 |
ENSMUST00000084509.3
|
deleted in malignant brain tumors 1 |
|
chr8_-_105933832 Show fit | 4.25 |
ENSMUST00000034368.6
|
chymotrypsin-like |
|
chr7_+_140763739 Show fit | 3.40 |
ENSMUST00000026552.7
|
cytochrome P450, family 2, subfamily e, polypeptide 1 |
|
chr11_-_99438143 Show fit | 2.84 |
ENSMUST00000017743.2
|
keratin 20 |
|
chr9_-_65422773 Show fit | 2.67 |
ENSMUST00000065894.5
|
solute carrier family 51, beta subunit |
|
chr1_-_89933290 Show fit | 2.33 |
ENSMUST00000036954.7
|
gastrulation brain homeobox 2 |
|
chr5_+_146079254 Show fit | 2.31 |
ENSMUST00000035571.8
|
cytochrome P450, family 3, subfamily a, polypeptide 59 |
|
chr3_-_90695706 Show fit | 1.96 |
ENSMUST00000069960.5
ENSMUST00000117167.1 |
S100 calcium binding protein A9 (calgranulin B) |
|
chrX_+_164090187 Show fit | 1.61 |
ENSMUST00000015545.3
|
transmembrane protein 27 |
|
chr14_+_80000292 Show fit | 1.33 |
ENSMUST00000088735.3
|
olfactomedin 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 9.0 | GO:0001833 | inner cell mass cell proliferation(GO:0001833) |
0.1 | 3.4 | GO:0017144 | drug metabolic process(GO:0017144) |
0.1 | 2.8 | GO:0045109 | intermediate filament organization(GO:0045109) |
0.3 | 2.7 | GO:0060050 | positive regulation of protein glycosylation(GO:0060050) |
0.3 | 2.3 | GO:0021555 | midbrain-hindbrain boundary morphogenesis(GO:0021555) |
0.7 | 2.0 | GO:0070488 | neutrophil aggregation(GO:0070488) |
0.2 | 1.6 | GO:0035542 | regulation of SNARE complex assembly(GO:0035542) |
0.0 | 1.3 | GO:1900026 | positive regulation of substrate adhesion-dependent cell spreading(GO:1900026) |
0.3 | 1.1 | GO:0014012 | peripheral nervous system axon regeneration(GO:0014012) |
0.2 | 0.8 | GO:0021824 | cerebral cortex tangential migration using cell-axon interactions(GO:0021824) gonadotrophin-releasing hormone neuronal migration to the hypothalamus(GO:0021828) hypothalamic tangential migration using cell-axon interactions(GO:0021856) facioacoustic ganglion development(GO:1903375) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 9.0 | GO:0030670 | phagocytic vesicle membrane(GO:0030670) |
0.0 | 3.4 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
0.0 | 2.8 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 1.3 | GO:0042581 | specific granule(GO:0042581) |
0.0 | 1.1 | GO:0005614 | interstitial matrix(GO:0005614) |
0.0 | 0.9 | GO:0043194 | axon initial segment(GO:0043194) |
0.0 | 0.7 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 0.5 | GO:0097136 | Bcl-2 family protein complex(GO:0097136) |
0.0 | 0.4 | GO:0061574 | ASAP complex(GO:0061574) |
0.0 | 0.4 | GO:0001533 | cornified envelope(GO:0001533) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.0 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.0 | 4.3 | GO:0008236 | serine-type peptidase activity(GO:0008236) |
0.1 | 3.4 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.0 | 3.2 | GO:0098811 | transcriptional activator activity, RNA polymerase II transcription factor binding(GO:0001190) transcriptional repressor activity, RNA polymerase II activating transcription factor binding(GO:0098811) |
0.5 | 2.3 | GO:0008390 | testosterone 16-alpha-hydroxylase activity(GO:0008390) |
0.3 | 2.3 | GO:0008241 | peptidyl-dipeptidase activity(GO:0008241) |
0.2 | 2.0 | GO:0050786 | Toll-like receptor 4 binding(GO:0035662) RAGE receptor binding(GO:0050786) |
0.0 | 1.5 | GO:0001965 | G-protein alpha-subunit binding(GO:0001965) |
0.1 | 1.1 | GO:0045545 | syndecan binding(GO:0045545) |
0.0 | 1.0 | GO:0048027 | mRNA 5'-UTR binding(GO:0048027) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 2.0 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 1.0 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 0.7 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 0.5 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.3 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.3 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 3.4 | REACTOME XENOBIOTICS | Genes involved in Xenobiotics |
0.0 | 0.8 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
0.0 | 0.8 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.0 | 0.7 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.0 | 0.7 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.5 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 0.3 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.3 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 0.3 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 0.3 | REACTOME N GLYCAN ANTENNAE ELONGATION IN THE MEDIAL TRANS GOLGI | Genes involved in N-glycan antennae elongation in the medial/trans-Golgi |