avrg: GSE58827: Dynamics of the Mouse Liver
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_46751832 Show fit | 20.13 |
ENSMUST00000075982.2
|
serum amyloid A 2 |
|
chr4_+_63344548 Show fit | 18.37 |
ENSMUST00000030044.2
|
orosomucoid 1 |
|
chr4_+_63362443 Show fit | 17.91 |
ENSMUST00000075341.3
|
orosomucoid 2 |
|
chr9_-_48605147 Show fit | 15.45 |
ENSMUST00000034808.5
ENSMUST00000119426.1 |
nicotinamide N-methyltransferase |
|
chr17_+_36942910 Show fit | 12.07 |
ENSMUST00000040498.5
|
ring finger protein 39 |
|
chr17_+_36943025 Show fit | 10.38 |
ENSMUST00000173072.1
|
ring finger protein 39 |
|
chrX_+_59999436 Show fit | 8.89 |
ENSMUST00000033477.4
|
coagulation factor IX |
|
chr17_-_56121946 Show fit | 8.26 |
ENSMUST00000041357.7
|
leucine-rich alpha-2-glycoprotein 1 |
|
chr5_+_114146525 Show fit | 6.13 |
ENSMUST00000102582.1
|
acetyl-Coenzyme A carboxylase beta |
|
chr11_-_75422524 Show fit | 5.92 |
ENSMUST00000125982.1
ENSMUST00000137103.1 |
serine (or cysteine) peptidase inhibitor, clade F, member 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 58.1 | GO:0006953 | acute-phase response(GO:0006953) |
0.0 | 15.2 | GO:0032259 | methylation(GO:0032259) |
1.0 | 11.2 | GO:0060770 | negative regulation of epithelial cell proliferation involved in prostate gland development(GO:0060770) |
0.3 | 9.8 | GO:0006825 | copper ion transport(GO:0006825) |
0.1 | 8.9 | GO:0031638 | zymogen activation(GO:0031638) |
0.2 | 8.3 | GO:1903846 | positive regulation of transforming growth factor beta receptor signaling pathway(GO:0030511) positive regulation of cellular response to transforming growth factor beta stimulus(GO:1903846) |
1.0 | 7.8 | GO:0045919 | positive regulation of cytolysis(GO:0045919) |
0.1 | 6.5 | GO:1900047 | negative regulation of blood coagulation(GO:0030195) negative regulation of hemostasis(GO:1900047) |
0.8 | 6.4 | GO:0097460 | positive regulation of oligodendrocyte progenitor proliferation(GO:0070447) ferrous iron import into cell(GO:0097460) ferrous iron import across plasma membrane(GO:0098707) |
2.0 | 6.1 | GO:2001293 | fatty-acyl-CoA biosynthetic process(GO:0046949) malonyl-CoA metabolic process(GO:2001293) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 41.1 | GO:0005615 | extracellular space(GO:0005615) |
0.6 | 22.0 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.1 | 19.8 | GO:0072562 | blood microparticle(GO:0072562) |
0.7 | 11.2 | GO:0043203 | axon hillock(GO:0043203) |
0.6 | 6.4 | GO:0097433 | dense body(GO:0097433) |
0.1 | 5.8 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.0 | 2.6 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
0.0 | 2.5 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.1 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 2.1 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 22.0 | GO:0042056 | chemoattractant activity(GO:0042056) |
0.2 | 15.2 | GO:0008170 | N-methyltransferase activity(GO:0008170) |
0.1 | 13.5 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 8.9 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 8.3 | GO:0005160 | transforming growth factor beta receptor binding(GO:0005160) |
1.1 | 7.8 | GO:0001851 | complement component C3b binding(GO:0001851) |
0.7 | 7.2 | GO:0004322 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.9 | 6.4 | GO:0072510 | ferric iron transmembrane transporter activity(GO:0015091) trivalent inorganic cation transmembrane transporter activity(GO:0072510) |
1.2 | 6.1 | GO:0003989 | acetyl-CoA carboxylase activity(GO:0003989) |
0.8 | 5.8 | GO:0016841 | ammonia-lyase activity(GO:0016841) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 7.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 7.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 5.1 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 2.0 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 1.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 1.4 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 0.8 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.4 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 0.2 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 15.5 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
0.6 | 8.9 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.6 | 7.8 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.2 | 7.2 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.2 | 6.1 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.0 | 5.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.7 | 5.7 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 5.1 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.1 | 5.0 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.1 | 4.5 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |