avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Clock | mm10_v2_chr5_-_76304474_76304548 | 0.50 | 2.1e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_+_17463826 Show fit | 1.97 |
ENSMUST00000140070.1
|
met proto-oncogene |
|
chr3_-_95882193 Show fit | 1.68 |
ENSMUST00000159863.1
ENSMUST00000159739.1 ENSMUST00000036418.3 |
predicted gene 129 |
|
chr16_+_32608973 Show fit | 1.67 |
ENSMUST00000120680.1
|
transferrin receptor |
|
chr17_-_26199008 Show fit | 1.46 |
ENSMUST00000142410.1
ENSMUST00000120333.1 ENSMUST00000039113.7 |
protein disulfide isomerase associated 2 |
|
chr6_+_17463927 Show fit | 1.41 |
ENSMUST00000115442.1
|
met proto-oncogene |
|
chr15_+_81811414 Show fit | 1.33 |
ENSMUST00000023024.7
|
thyrotroph embryonic factor |
|
chr19_+_26623419 Show fit | 1.33 |
ENSMUST00000176584.1
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
|
chr2_+_31887262 Show fit | 1.27 |
ENSMUST00000138325.1
ENSMUST00000028187.6 |
laminin gamma 3 |
|
chr3_-_95882232 Show fit | 1.27 |
ENSMUST00000161866.1
|
predicted gene 129 |
|
chr11_+_69095217 Show fit | 1.22 |
ENSMUST00000101004.2
|
period circadian clock 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.0 | GO:0008643 | carbohydrate transport(GO:0008643) |
0.5 | 3.8 | GO:0070494 | regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495) |
0.1 | 2.4 | GO:0048642 | negative regulation of skeletal muscle tissue development(GO:0048642) |
0.1 | 1.7 | GO:0033572 | transferrin transport(GO:0033572) |
0.0 | 1.5 | GO:1902175 | regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) |
0.1 | 1.3 | GO:0035887 | aortic smooth muscle cell differentiation(GO:0035887) |
0.0 | 1.3 | GO:0014002 | astrocyte development(GO:0014002) |
0.2 | 1.2 | GO:0097167 | circadian regulation of translation(GO:0097167) |
0.2 | 1.2 | GO:0006189 | 'de novo' IMP biosynthetic process(GO:0006189) |
0.2 | 1.1 | GO:0006543 | glutamine catabolic process(GO:0006543) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.3 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.0 | 4.1 | GO:0000139 | Golgi membrane(GO:0000139) |
0.1 | 2.0 | GO:0071564 | npBAF complex(GO:0071564) |
0.2 | 1.7 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
0.0 | 1.6 | GO:0005604 | basement membrane(GO:0005604) |
0.3 | 1.1 | GO:0031084 | BLOC-2 complex(GO:0031084) |
0.1 | 0.9 | GO:0071141 | SMAD protein complex(GO:0071141) |
0.0 | 0.9 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.0 | 0.7 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
0.1 | 0.5 | GO:0097433 | dense body(GO:0097433) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 4.0 | GO:0005351 | sugar:proton symporter activity(GO:0005351) |
1.0 | 3.8 | GO:0005008 | hepatocyte growth factor-activated receptor activity(GO:0005008) |
0.0 | 2.4 | GO:0030332 | cyclin binding(GO:0030332) |
0.6 | 1.7 | GO:0004998 | transferrin receptor activity(GO:0004998) |
0.1 | 1.5 | GO:0031545 | peptidyl-proline 4-dioxygenase activity(GO:0031545) |
0.0 | 1.3 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
0.0 | 1.2 | GO:0070888 | E-box binding(GO:0070888) |
0.0 | 1.2 | GO:0001105 | RNA polymerase II transcription coactivator activity(GO:0001105) |
0.0 | 1.2 | GO:0016763 | transferase activity, transferring pentosyl groups(GO:0016763) |
0.3 | 1.0 | GO:0035500 | MH2 domain binding(GO:0035500) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.7 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.9 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 1.7 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 1.1 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.8 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.6 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.5 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.5 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.2 | 2.3 | REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS | Genes involved in Purine ribonucleoside monophosphate biosynthesis |
0.0 | 1.7 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
0.0 | 1.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 0.9 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 0.7 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.0 | 0.6 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 0.6 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.0 | 0.5 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 0.5 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |