avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Creb1 | mm10_v2_chr1_+_64532790_64532815 | -0.11 | 5.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_55099417 Show fit | 5.08 |
ENSMUST00000061856.5
|
glycerol-3-phosphate acyltransferase, mitochondrial |
|
chr1_+_185363076 Show fit | 3.19 |
ENSMUST00000046514.7
|
glutamyl-prolyl-tRNA synthetase |
|
chr12_-_4907705 Show fit | 2.84 |
ENSMUST00000020962.5
|
UBX domain protein 2A |
|
chr10_+_62920630 Show fit | 2.78 |
ENSMUST00000044977.3
|
solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 |
|
chr12_+_108334341 Show fit | 2.61 |
ENSMUST00000021684.4
|
cytochrome P450, family 46, subfamily a, polypeptide 1 |
|
chr13_-_29984219 Show fit | 2.58 |
ENSMUST00000146092.1
|
E2F transcription factor 3 |
|
chr14_-_59597836 Show fit | 2.46 |
ENSMUST00000167100.1
ENSMUST00000022555.4 ENSMUST00000056997.7 ENSMUST00000171683.1 |
cytidine and dCMP deaminase domain containing 1 |
|
chr10_+_62920648 Show fit | 2.36 |
ENSMUST00000144459.1
|
solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 |
|
chr12_-_4907229 Show fit | 2.34 |
ENSMUST00000142867.1
|
UBX domain protein 2A |
|
chr11_-_86807624 Show fit | 2.27 |
ENSMUST00000018569.7
|
DEAH (Asp-Glu-Ala-His) box polypeptide 40 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.2 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
0.5 | 5.1 | GO:0070236 | phospholipid homeostasis(GO:0055091) negative regulation of activation-induced cell death of T cells(GO:0070236) |
0.0 | 4.7 | GO:0006839 | mitochondrial transport(GO:0006839) |
0.2 | 4.0 | GO:0070816 | phosphorylation of RNA polymerase II C-terminal domain(GO:0070816) |
0.1 | 3.8 | GO:0043039 | tRNA aminoacylation(GO:0043039) |
0.2 | 3.7 | GO:0015693 | magnesium ion transport(GO:0015693) |
1.1 | 3.3 | GO:0042998 | positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004) |
0.2 | 3.2 | GO:0097034 | mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034) |
0.1 | 3.1 | GO:0010960 | magnesium ion homeostasis(GO:0010960) |
0.3 | 2.9 | GO:0043928 | exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay(GO:0043928) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.3 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.1 | 7.8 | GO:0005801 | cis-Golgi network(GO:0005801) |
0.0 | 5.1 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.6 | 3.6 | GO:1990393 | 3M complex(GO:1990393) |
0.1 | 3.3 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.5 | 3.2 | GO:0097452 | GAIT complex(GO:0097452) |
0.0 | 3.1 | GO:0005681 | spliceosomal complex(GO:0005681) |
0.2 | 3.0 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.5 | 2.7 | GO:0042025 | host cell nucleus(GO:0042025) host cell nuclear part(GO:0044094) |
0.2 | 2.7 | GO:0072546 | ER membrane protein complex(GO:0072546) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.7 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.1 | 5.5 | GO:0008374 | O-acyltransferase activity(GO:0008374) |
0.2 | 5.2 | GO:0033130 | acetylcholine receptor binding(GO:0033130) |
0.5 | 4.2 | GO:0009019 | tRNA (guanine-N1-)-methyltransferase activity(GO:0009019) |
0.1 | 3.6 | GO:0050750 | low-density lipoprotein particle receptor binding(GO:0050750) |
0.2 | 3.3 | GO:0102391 | decanoate--CoA ligase activity(GO:0102391) |
0.0 | 3.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 3.2 | GO:0035613 | RNA stem-loop binding(GO:0035613) |
0.2 | 3.0 | GO:0001054 | RNA polymerase I activity(GO:0001054) |
0.0 | 3.0 | GO:0019905 | syntaxin binding(GO:0019905) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 4.2 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 3.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 2.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 2.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 1.9 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 1.3 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 1.2 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 1.0 | PID RANBP2 PATHWAY | Sumoylation by RanBP2 regulates transcriptional repression |
0.0 | 0.9 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.4 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |
0.4 | 5.1 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |
0.0 | 4.8 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 3.6 | REACTOME RNA POL I TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase I Transcription Termination |
0.1 | 3.2 | REACTOME CYTOSOLIC TRNA AMINOACYLATION | Genes involved in Cytosolic tRNA aminoacylation |
0.2 | 2.6 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.2 | 2.6 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.1 | 2.6 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 2.6 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |
0.0 | 2.5 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |