avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Cux1 | mm10_v2_chr5_-_136567307_136567445 | -0.64 | 2.8e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_39287074 Show fit | 17.89 |
ENSMUST00000003137.8
|
cytochrome P450, family 2, subfamily c, polypeptide 29 |
|
chr4_+_63344548 Show fit | 11.99 |
ENSMUST00000030044.2
|
orosomucoid 1 |
|
chr4_-_62150810 Show fit | 10.06 |
ENSMUST00000077719.3
|
major urinary protein 21 |
|
chr13_-_4523322 Show fit | 9.53 |
ENSMUST00000080361.5
ENSMUST00000078239.3 |
aldo-keto reductase family 1, member C20 |
|
chr15_+_6445320 Show fit | 9.42 |
ENSMUST00000022749.9
|
complement component 9 |
|
chr3_-_81975742 Show fit | 8.53 |
ENSMUST00000029645.8
|
tryptophan 2,3-dioxygenase |
|
chr19_+_39992424 Show fit | 8.25 |
ENSMUST00000049178.2
|
cytochrome P450, family 2. subfamily c, polypeptide 37 |
|
chr7_-_99695809 Show fit | 7.92 |
ENSMUST00000107086.2
|
solute carrier organic anion transporter family, member 2b1 |
|
chr19_+_40089688 Show fit | 7.73 |
ENSMUST00000068094.6
ENSMUST00000080171.2 |
cytochrome P450, family 2, subfamily c, polypeptide 50 |
|
chr7_-_99695628 Show fit | 7.29 |
ENSMUST00000145381.1
|
solute carrier organic anion transporter family, member 2b1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 62.7 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
5.5 | 22.1 | GO:0071718 | sodium-independent icosanoid transport(GO:0071718) |
0.3 | 16.6 | GO:0006953 | acute-phase response(GO:0006953) |
0.7 | 15.0 | GO:0031340 | positive regulation of vesicle fusion(GO:0031340) |
0.8 | 13.4 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
3.3 | 9.9 | GO:1903002 | regulation of lipid transport across blood brain barrier(GO:1903000) positive regulation of lipid transport across blood brain barrier(GO:1903002) |
0.9 | 9.5 | GO:0097421 | liver regeneration(GO:0097421) |
0.1 | 9.3 | GO:0022900 | electron transport chain(GO:0022900) |
1.0 | 9.0 | GO:0071569 | protein ufmylation(GO:0071569) |
2.8 | 8.5 | GO:0019442 | tryptophan catabolic process to acetyl-CoA(GO:0019442) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 89.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.3 | 23.3 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.1 | 10.6 | GO:0070469 | respiratory chain(GO:0070469) |
0.3 | 10.1 | GO:0030673 | axolemma(GO:0030673) |
2.0 | 9.9 | GO:0034365 | discoidal high-density lipoprotein particle(GO:0034365) |
2.4 | 9.4 | GO:0044279 | other organism cell membrane(GO:0044218) other organism membrane(GO:0044279) |
0.1 | 8.1 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 7.4 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 6.9 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.1 | 6.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 23.6 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
1.1 | 23.2 | GO:0015125 | bile acid transmembrane transporter activity(GO:0015125) |
5.1 | 20.5 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
3.1 | 18.6 | GO:0034875 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.1 | 15.9 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.3 | 15.5 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.4 | 13.6 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
3.3 | 9.9 | GO:0046911 | metal chelating activity(GO:0046911) |
0.4 | 9.1 | GO:0004033 | aldo-keto reductase (NADP) activity(GO:0004033) |
2.1 | 8.5 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 14.6 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 6.2 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.1 | 4.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 4.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.2 | 3.8 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 3.1 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 2.7 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 2.6 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 2.4 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.1 | 2.3 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 22.1 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.7 | 17.6 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.4 | 14.7 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.5 | 8.5 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 8.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.2 | 7.6 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.0 | 5.6 | REACTOME TRANSMISSION ACROSS CHEMICAL SYNAPSES | Genes involved in Transmission across Chemical Synapses |
0.2 | 5.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.3 | 5.1 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
0.3 | 4.9 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |