avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f2 | mm10_v2_chr4_+_136172367_136172395 | 0.96 | 1.0e-20 | Click! |
E2f5 | mm10_v2_chr3_+_14578609_14578687 | 0.46 | 4.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_136172367 Show fit | 80.62 |
ENSMUST00000061721.5
|
E2F transcription factor 2 |
|
chr4_+_134864536 Show fit | 75.27 |
ENSMUST00000030627.7
|
Rh blood group, D antigen |
|
chr4_+_126556935 Show fit | 54.09 |
ENSMUST00000048391.8
|
claspin |
|
chr17_+_56304313 Show fit | 46.71 |
ENSMUST00000113035.1
ENSMUST00000113039.2 ENSMUST00000142387.1 |
ubiquitin-like, containing PHD and RING finger domains, 1 |
|
chr4_+_126556994 Show fit | 45.17 |
ENSMUST00000147675.1
|
claspin |
|
chr15_-_55090422 Show fit | 44.94 |
ENSMUST00000110231.1
ENSMUST00000023059.6 |
defective in sister chromatid cohesion 1 homolog (S. cerevisiae) |
|
chr12_+_24708241 Show fit | 40.94 |
ENSMUST00000020980.5
|
ribonucleotide reductase M2 |
|
chr7_-_6730412 Show fit | 40.20 |
ENSMUST00000051209.4
|
paternally expressed 3 |
|
chr9_+_122951051 Show fit | 38.28 |
ENSMUST00000040717.5
|
kinesin family member 15 |
|
chr10_-_69352886 Show fit | 36.79 |
ENSMUST00000119827.1
ENSMUST00000020099.5 |
cyclin-dependent kinase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.8 | 147.6 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
15.7 | 110.0 | GO:1990086 | lens fiber cell apoptotic process(GO:1990086) |
7.2 | 107.9 | GO:0010216 | maintenance of DNA methylation(GO:0010216) |
9.7 | 106.9 | GO:0033314 | mitotic DNA replication checkpoint(GO:0033314) |
4.1 | 102.5 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.9 | 75.6 | GO:0006342 | chromatin silencing(GO:0006342) |
25.1 | 75.3 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
3.8 | 69.1 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
1.6 | 61.7 | GO:0045662 | negative regulation of myoblast differentiation(GO:0045662) |
5.8 | 57.9 | GO:1902969 | mitotic DNA replication(GO:1902969) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
12.1 | 182.2 | GO:0042555 | MCM complex(GO:0042555) |
0.1 | 168.5 | GO:0005829 | cytosol(GO:0005829) |
2.8 | 155.2 | GO:0005657 | replication fork(GO:0005657) |
0.2 | 150.0 | GO:0005694 | chromosome(GO:0005694) |
0.7 | 120.3 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
13.8 | 69.1 | GO:0005971 | ribonucleoside-diphosphate reductase complex(GO:0005971) |
0.0 | 63.2 | GO:0005634 | nucleus(GO:0005634) |
0.2 | 63.1 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 56.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
1.0 | 53.3 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 156.2 | GO:0001047 | core promoter binding(GO:0001047) |
2.6 | 121.8 | GO:0003678 | DNA helicase activity(GO:0003678) |
16.5 | 99.3 | GO:0010997 | anaphase-promoting complex binding(GO:0010997) |
13.6 | 81.9 | GO:0031493 | nucleosomal histone binding(GO:0031493) |
5.7 | 79.7 | GO:0003688 | DNA replication origin binding(GO:0003688) |
2.6 | 75.3 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
13.8 | 69.1 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
2.4 | 67.8 | GO:0003887 | DNA-directed DNA polymerase activity(GO:0003887) |
0.1 | 48.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
4.1 | 44.9 | GO:0033170 | DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.0 | 271.2 | PID ATR PATHWAY | ATR signaling pathway |
1.9 | 158.5 | PID E2F PATHWAY | E2F transcription factor network |
8.3 | 133.6 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.9 | 95.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
8.4 | 75.9 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
1.5 | 52.6 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
1.0 | 48.5 | PID PLK1 PATHWAY | PLK1 signaling events |
1.3 | 36.4 | PID S1P S1P1 PATHWAY | S1P1 pathway |
0.3 | 29.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.4 | 28.8 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.4 | 230.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
12.5 | 224.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
11.5 | 80.6 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
5.0 | 69.4 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
1.0 | 58.9 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.3 | 57.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
1.1 | 52.3 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
1.4 | 38.3 | REACTOME KINESINS | Genes involved in Kinesins |
3.1 | 36.8 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
1.9 | 32.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |