avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f3 | mm10_v2_chr13_-_29984219_29984353 | 0.79 | 8.1e-09 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_6730412 Show fit | 7.63 |
ENSMUST00000051209.4
|
paternally expressed 3 |
|
chr11_+_11685909 Show fit | 7.35 |
ENSMUST00000065433.5
|
IKAROS family zinc finger 1 |
|
chr4_+_46450892 Show fit | 6.22 |
ENSMUST00000102926.4
|
acidic (leucine-rich) nuclear phosphoprotein 32 family, member B |
|
chr2_+_118111876 Show fit | 6.15 |
ENSMUST00000039559.8
|
thrombospondin 1 |
|
chr12_-_4874341 Show fit | 5.81 |
ENSMUST00000137337.1
ENSMUST00000045921.7 |
major facilitator superfamily domain containing 2B |
|
chr3_-_84480419 Show fit | 5.46 |
ENSMUST00000107689.1
|
FH2 domain containing 1 |
|
chr10_+_20347788 Show fit | 4.77 |
ENSMUST00000169712.1
|
mitochondrial fission regulator 2 |
|
chrX_+_135993820 Show fit | 4.74 |
ENSMUST00000058119.7
|
adipocyte-related X-chromosome expressed sequence 2 |
|
chr2_+_109280738 Show fit | 4.68 |
ENSMUST00000028527.7
|
kinesin family member 18A |
|
chr7_-_100863373 Show fit | 4.53 |
ENSMUST00000142885.1
ENSMUST00000008462.3 |
RELT tumor necrosis factor receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.8 | GO:0045662 | negative regulation of myoblast differentiation(GO:0045662) |
2.5 | 7.4 | GO:0045660 | positive regulation of neutrophil differentiation(GO:0045660) |
1.0 | 6.9 | GO:0010032 | meiotic chromosome condensation(GO:0010032) |
2.1 | 6.2 | GO:0010751 | negative regulation of nitric oxide mediated signal transduction(GO:0010751) regulation of cGMP-mediated signaling(GO:0010752) |
0.2 | 6.2 | GO:0043486 | histone exchange(GO:0043486) |
1.0 | 5.8 | GO:0010166 | wax biosynthetic process(GO:0010025) wax metabolic process(GO:0010166) |
0.4 | 5.8 | GO:0033504 | floor plate development(GO:0033504) |
1.1 | 5.4 | GO:0034092 | negative regulation of maintenance of sister chromatid cohesion(GO:0034092) negative regulation of maintenance of mitotic sister chromatid cohesion(GO:0034183) maintenance of mitotic sister chromatid cohesion, telomeric(GO:0099403) mitotic sister chromatid cohesion, telomeric(GO:0099404) regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904907) negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904908) |
0.1 | 4.8 | GO:0000266 | mitochondrial fission(GO:0000266) |
0.5 | 4.7 | GO:2000051 | negative regulation of non-canonical Wnt signaling pathway(GO:2000051) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 7.4 | GO:0031618 | nuclear pericentric heterochromatin(GO:0031618) |
1.0 | 6.9 | GO:0000796 | condensin complex(GO:0000796) |
0.7 | 6.2 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.0 | 6.2 | GO:0005925 | focal adhesion(GO:0005925) |
0.1 | 5.8 | GO:0005814 | centriole(GO:0005814) |
0.1 | 5.2 | GO:0016592 | mediator complex(GO:0016592) |
0.7 | 4.7 | GO:0005828 | kinetochore microtubule(GO:0005828) |
0.4 | 4.4 | GO:0008290 | F-actin capping protein complex(GO:0008290) |
1.4 | 4.2 | GO:0000799 | nuclear condensin complex(GO:0000799) |
1.1 | 4.2 | GO:1990707 | subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.4 | GO:0008187 | poly-pyrimidine tract binding(GO:0008187) |
1.5 | 6.2 | GO:0070052 | collagen V binding(GO:0070052) |
0.1 | 5.9 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
1.2 | 5.8 | GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019) |
0.1 | 5.2 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
0.0 | 5.0 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 5.0 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
0.1 | 4.8 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.3 | 4.7 | GO:0051010 | microtubule plus-end binding(GO:0051010) |
0.1 | 4.5 | GO:0005031 | tumor necrosis factor-activated receptor activity(GO:0005031) death receptor activity(GO:0005035) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 14.6 | PID ATM PATHWAY | ATM pathway |
0.2 | 11.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 7.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 5.6 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.2 | 5.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.1 | 4.3 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 3.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 2.7 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 2.6 | PID HEDGEHOG GLI PATHWAY | Hedgehog signaling events mediated by Gli proteins |
0.1 | 2.2 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 11.6 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.1 | 7.6 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.1 | 7.0 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.2 | 5.8 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.2 | 5.5 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 5.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.2 | 4.4 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.2 | 4.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.3 | 4.0 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
0.1 | 3.9 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |