avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f4 | mm10_v2_chr8_+_105297663_105297742 | 0.94 | 5.0e-17 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_72438519 Show fit | 29.37 |
ENSMUST00000184604.1
|
meiosis-specific nuclear structural protein 1 |
|
chr9_+_72438534 Show fit | 27.71 |
ENSMUST00000034746.8
|
meiosis-specific nuclear structural protein 1 |
|
chr2_+_163054682 Show fit | 27.20 |
ENSMUST00000018005.3
|
myeloblastosis oncogene-like 2 |
|
chr4_+_134510999 Show fit | 25.35 |
ENSMUST00000105866.2
|
aurora kinase A and ninein interacting protein |
|
chr18_-_34751502 Show fit | 24.23 |
ENSMUST00000060710.7
|
cell division cycle 25C |
|
chr8_-_53638945 Show fit | 23.67 |
ENSMUST00000047768.4
|
nei like 3 (E. coli) |
|
chr14_-_47418407 Show fit | 23.55 |
ENSMUST00000043296.3
|
discs, large (Drosophila) homolog-associated protein 5 |
|
chr4_-_132345715 Show fit | 23.17 |
ENSMUST00000084250.4
|
regulator of chromosome condensation 1 |
|
chr16_-_30310773 Show fit | 22.32 |
ENSMUST00000061190.6
|
glycoprotein 5 (platelet) |
|
chr4_-_132345686 Show fit | 22.17 |
ENSMUST00000030726.6
|
regulator of chromosome condensation 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 66.2 | GO:0051290 | protein heterotetramerization(GO:0051290) |
2.9 | 54.7 | GO:0070986 | left/right axis specification(GO:0070986) |
2.9 | 42.8 | GO:0015816 | glycine transport(GO:0015816) |
1.3 | 38.9 | GO:0040034 | regulation of development, heterochronic(GO:0040034) |
1.0 | 38.5 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.9 | 32.5 | GO:0008608 | attachment of spindle microtubules to kinetochore(GO:0008608) |
0.5 | 27.2 | GO:0090307 | mitotic spindle assembly(GO:0090307) |
0.9 | 26.1 | GO:0008340 | determination of adult lifespan(GO:0008340) |
1.8 | 24.7 | GO:2000042 | negative regulation of double-strand break repair via homologous recombination(GO:2000042) |
0.8 | 24.2 | GO:1902751 | positive regulation of cell cycle G2/M phase transition(GO:1902751) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 57.1 | GO:0005882 | intermediate filament(GO:0005882) |
0.4 | 47.8 | GO:0000794 | condensed nuclear chromosome(GO:0000794) |
5.7 | 34.3 | GO:0031262 | Ndc80 complex(GO:0031262) |
5.4 | 27.2 | GO:0031523 | Myb complex(GO:0031523) |
0.3 | 25.4 | GO:0000922 | spindle pole(GO:0000922) |
1.1 | 23.5 | GO:0031616 | spindle pole centrosome(GO:0031616) |
2.4 | 21.2 | GO:0008278 | cohesin complex(GO:0008278) |
0.6 | 20.9 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.0 | 20.1 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
1.5 | 17.7 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.6 | 45.3 | GO:0005087 | Ran guanyl-nucleotide exchange factor activity(GO:0005087) |
3.1 | 42.8 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.8 | 36.0 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
2.5 | 27.2 | GO:0001135 | transcription factor activity, RNA polymerase II transcription factor recruiting(GO:0001135) |
0.0 | 25.0 | GO:0042802 | identical protein binding(GO:0042802) |
0.5 | 24.2 | GO:0050699 | WW domain binding(GO:0050699) |
4.7 | 23.7 | GO:0000405 | bubble DNA binding(GO:0000405) |
0.2 | 20.0 | GO:0005518 | collagen binding(GO:0005518) |
0.5 | 17.7 | GO:0070840 | dynein complex binding(GO:0070840) |
0.6 | 17.5 | GO:0070182 | DNA polymerase binding(GO:0070182) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 59.8 | PID ATR PATHWAY | ATR signaling pathway |
0.4 | 47.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.8 | 33.8 | PID AURORA A PATHWAY | Aurora A signaling |
0.4 | 30.9 | PID E2F PATHWAY | E2F transcription factor network |
0.5 | 16.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 15.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
1.0 | 13.8 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.3 | 11.2 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.3 | 10.4 | ST GAQ PATHWAY | G alpha q Pathway |
0.3 | 10.0 | PID FANCONI PATHWAY | Fanconi anemia pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 60.9 | REACTOME LATE PHASE OF HIV LIFE CYCLE | Genes involved in Late Phase of HIV Life Cycle |
2.2 | 56.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.9 | 42.8 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.8 | 40.5 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
2.4 | 24.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
1.5 | 22.3 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.2 | 17.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
1.1 | 15.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.6 | 11.6 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.2 | 11.2 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |