avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f6 | mm10_v2_chr12_+_16810940_16810978 | 0.60 | 9.4e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_76709997 Show fit | 4.94 |
ENSMUST00000166101.1
|
spectrin beta, erythrocytic |
|
chr4_-_46404224 Show fit | 4.38 |
ENSMUST00000107764.2
|
hemogen |
|
chr9_+_70679016 Show fit | 3.63 |
ENSMUST00000144537.1
|
a disintegrin and metallopeptidase domain 10 |
|
chrX_-_52613936 Show fit | 3.51 |
ENSMUST00000114857.1
|
glypican 3 |
|
chr11_+_87755567 Show fit | 3.50 |
ENSMUST00000123700.1
|
RIKEN cDNA A430104N18 gene |
|
chrX_-_52613913 Show fit | 3.20 |
ENSMUST00000069360.7
|
glypican 3 |
|
chr15_+_82341179 Show fit | 3.18 |
ENSMUST00000050349.2
|
family with sequence similarity 109, member B |
|
chr6_+_148047259 Show fit | 3.12 |
ENSMUST00000032443.7
|
fatty acyl CoA reductase 2 |
|
chr7_-_38107490 Show fit | 3.05 |
ENSMUST00000108023.3
|
cyclin E1 |
|
chr11_-_102088471 Show fit | 2.69 |
ENSMUST00000017458.4
|
membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 8.9 | GO:0006270 | DNA replication initiation(GO:0006270) |
1.1 | 7.6 | GO:0030421 | defecation(GO:0030421) |
1.3 | 6.7 | GO:0072138 | mesenchymal cell proliferation involved in ureteric bud development(GO:0072138) |
0.6 | 5.9 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
0.3 | 5.6 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.3 | 5.1 | GO:0010216 | maintenance of DNA methylation(GO:0010216) |
0.5 | 5.0 | GO:0033314 | mitotic DNA replication checkpoint(GO:0033314) |
0.8 | 4.9 | GO:0010166 | wax biosynthetic process(GO:0010025) wax metabolic process(GO:0010166) |
0.1 | 4.9 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
1.0 | 4.8 | GO:0042117 | monocyte activation(GO:0042117) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.6 | GO:0000791 | euchromatin(GO:0000791) |
0.6 | 8.5 | GO:0042555 | MCM complex(GO:0042555) |
0.1 | 5.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
1.0 | 5.0 | GO:0005971 | ribonucleoside-diphosphate reductase complex(GO:0005971) |
0.4 | 4.8 | GO:0097197 | tetraspanin-enriched microdomain(GO:0097197) |
0.1 | 4.2 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 4.2 | GO:0000784 | nuclear chromosome, telomeric region(GO:0000784) |
0.6 | 4.0 | GO:0008091 | spectrin(GO:0008091) |
0.1 | 3.8 | GO:0097228 | sperm principal piece(GO:0097228) |
0.0 | 3.6 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 7.6 | GO:0043395 | heparan sulfate proteoglycan binding(GO:0043395) |
0.2 | 7.5 | GO:0004003 | ATP-dependent DNA helicase activity(GO:0004003) |
0.0 | 5.8 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
1.0 | 5.0 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
1.0 | 4.9 | GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019) |
0.0 | 4.4 | GO:0008201 | heparin binding(GO:0008201) |
0.7 | 4.3 | GO:0010997 | anaphase-promoting complex binding(GO:0010997) |
0.1 | 4.3 | GO:0042169 | SH2 domain binding(GO:0042169) |
0.6 | 3.9 | GO:0044729 | hemi-methylated DNA-binding(GO:0044729) |
0.0 | 3.5 | GO:0017048 | Rho GTPase binding(GO:0017048) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 17.4 | PID ATR PATHWAY | ATR signaling pathway |
0.2 | 7.8 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 6.7 | PID PS1 PATHWAY | Presenilin action in Notch and Wnt signaling |
0.0 | 5.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 4.7 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.1 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
0.1 | 3.9 | PID ATM PATHWAY | ATM pathway |
0.0 | 3.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 3.3 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.8 | PID EPHB FWD PATHWAY | EPHB forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 9.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.5 | 8.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 5.7 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.4 | 5.4 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.3 | 4.6 | REACTOME RECEPTOR LIGAND BINDING INITIATES THE SECOND PROTEOLYTIC CLEAVAGE OF NOTCH RECEPTOR | Genes involved in Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor |
0.1 | 4.3 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 4.1 | REACTOME A TETRASACCHARIDE LINKER SEQUENCE IS REQUIRED FOR GAG SYNTHESIS | Genes involved in A tetrasaccharide linker sequence is required for GAG synthesis |
0.3 | 3.5 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.0 | 3.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 3.3 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |