avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f7 | mm10_v2_chr10_+_110745433_110745572 | 0.83 | 5.3e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_108579445 Show fit | 15.06 |
ENSMUST00000102744.3
|
origin recognition complex, subunit 1 |
|
chr7_-_142578139 Show fit | 11.19 |
ENSMUST00000136359.1
|
H19 fetal liver mRNA |
|
chr15_+_102296256 Show fit | 10.13 |
ENSMUST00000064924.4
|
extra spindle poles-like 1 (S. cerevisiae) |
|
chr13_-_100775844 Show fit | 9.68 |
ENSMUST00000075550.3
|
centromere protein H |
|
chr12_+_24708984 Show fit | 8.71 |
ENSMUST00000154588.1
|
ribonucleotide reductase M2 |
|
chr10_+_3973086 Show fit | 8.65 |
ENSMUST00000117291.1
ENSMUST00000120585.1 ENSMUST00000043735.7 |
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like |
|
chr13_-_21833575 Show fit | 8.13 |
ENSMUST00000081342.5
|
histone cluster 1, H2ap |
|
chr11_+_102248842 Show fit | 8.07 |
ENSMUST00000100392.4
|
cDNA sequence BC030867 |
|
chr13_-_21753851 Show fit | 7.68 |
ENSMUST00000074752.2
|
histone cluster 1, H2ak |
|
chr12_+_24708241 Show fit | 7.50 |
ENSMUST00000020980.5
|
ribonucleotide reductase M2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 24.7 | GO:0006342 | chromatin silencing(GO:0006342) |
0.9 | 16.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
3.0 | 15.1 | GO:0070318 | positive regulation of G0 to G1 transition(GO:0070318) |
1.0 | 11.4 | GO:0033314 | mitotic DNA replication checkpoint(GO:0033314) |
0.9 | 11.2 | GO:2000653 | regulation of genetic imprinting(GO:2000653) |
0.7 | 10.1 | GO:0000212 | meiotic spindle organization(GO:0000212) |
1.4 | 8.7 | GO:0009256 | 10-formyltetrahydrofolate metabolic process(GO:0009256) tetrahydrofolate biosynthetic process(GO:0046654) |
0.8 | 8.4 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
1.1 | 7.4 | GO:1990086 | lens fiber cell apoptotic process(GO:1990086) |
0.2 | 6.7 | GO:0034723 | DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 20.6 | GO:0000786 | nucleosome(GO:0000786) |
2.5 | 20.2 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
3.2 | 16.2 | GO:0005971 | ribonucleoside-diphosphate reductase complex(GO:0005971) |
0.0 | 13.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.2 | 13.2 | GO:0005876 | spindle microtubule(GO:0005876) |
0.1 | 11.0 | GO:0072686 | mitotic spindle(GO:0072686) |
0.1 | 10.8 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.1 | 10.5 | GO:0005844 | polysome(GO:0005844) |
0.4 | 5.4 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 5.3 | GO:0000776 | kinetochore(GO:0000776) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 16.2 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
1.9 | 11.4 | GO:0010997 | anaphase-promoting complex binding(GO:0010997) |
2.2 | 10.8 | GO:0043515 | kinetochore binding(GO:0043515) |
0.8 | 10.8 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.1 | 10.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.0 | 10.1 | GO:0001047 | core promoter binding(GO:0001047) |
0.0 | 9.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
2.2 | 8.7 | GO:0004488 | methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488) |
0.3 | 7.1 | GO:0008353 | RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353) |
0.0 | 6.8 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 32.4 | PID E2F PATHWAY | E2F transcription factor network |
0.5 | 21.9 | PID ATR PATHWAY | ATR signaling pathway |
1.0 | 9.1 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.1 | 8.3 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.5 | 7.4 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.1 | 5.2 | PID AURORA A PATHWAY | Aurora A signaling |
0.1 | 4.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 3.7 | PID EPHB FWD PATHWAY | EPHB forward signaling |
0.2 | 2.5 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
0.1 | 2.4 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.2 | 22.2 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.4 | 21.3 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
1.2 | 16.2 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
1.1 | 14.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
1.5 | 7.4 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.8 | 6.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
0.2 | 6.6 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.3 | 6.5 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.1 | 4.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 3.5 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |