avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2f8 | mm10_v2_chr7_-_48881596_48881619 | 0.77 | 4.3e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_90695706 Show fit | 18.19 |
ENSMUST00000069960.5
ENSMUST00000117167.1 |
S100 calcium binding protein A9 (calgranulin B) |
|
chr10_-_21160925 Show fit | 14.62 |
ENSMUST00000020158.6
|
myeloblastosis oncogene |
|
chr12_+_109540979 Show fit | 12.59 |
ENSMUST00000129245.1
ENSMUST00000143836.1 ENSMUST00000124106.1 |
maternally expressed 3 |
|
chr11_+_98907801 Show fit | 11.59 |
ENSMUST00000092706.6
|
cell division cycle 6 |
|
chr17_+_56303321 Show fit | 11.40 |
ENSMUST00000001258.8
|
ubiquitin-like, containing PHD and RING finger domains, 1 |
|
chr2_+_163054682 Show fit | 11.39 |
ENSMUST00000018005.3
|
myeloblastosis oncogene-like 2 |
|
chr5_+_123749696 Show fit | 10.87 |
ENSMUST00000031366.7
|
kinetochore associated 1 |
|
chr17_+_56303396 Show fit | 10.53 |
ENSMUST00000113038.1
|
ubiquitin-like, containing PHD and RING finger domains, 1 |
|
chr8_+_75109528 Show fit | 10.18 |
ENSMUST00000164309.1
|
minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) |
|
chr12_+_24708984 Show fit | 9.21 |
ENSMUST00000154588.1
|
ribonucleotide reductase M2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 30.6 | GO:0010216 | maintenance of DNA methylation(GO:0010216) |
1.0 | 24.8 | GO:0006270 | DNA replication initiation(GO:0006270) |
2.1 | 20.9 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
6.1 | 18.2 | GO:0070488 | neutrophil aggregation(GO:0070488) |
1.2 | 17.7 | GO:0051574 | positive regulation of histone H3-K9 methylation(GO:0051574) |
0.9 | 16.9 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.4 | 12.6 | GO:0008340 | determination of adult lifespan(GO:0008340) |
0.2 | 11.4 | GO:0090307 | mitotic spindle assembly(GO:0090307) |
0.1 | 10.9 | GO:0007093 | mitotic cell cycle checkpoint(GO:0007093) |
0.3 | 9.1 | GO:0034723 | DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 34.6 | GO:0005657 | replication fork(GO:0005657) |
1.9 | 28.2 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 17.2 | GO:0005730 | nucleolus(GO:0005730) |
3.4 | 16.9 | GO:0005971 | ribonucleoside-diphosphate reductase complex(GO:0005971) |
0.0 | 14.6 | GO:0031012 | extracellular matrix(GO:0031012) |
2.3 | 11.4 | GO:0031523 | Myb complex(GO:0031523) |
3.6 | 10.9 | GO:1990423 | RZZ complex(GO:1990423) |
0.3 | 10.5 | GO:0051233 | spindle midzone(GO:0051233) |
0.4 | 9.3 | GO:0035098 | ESC/E(Z) complex(GO:0035098) |
3.0 | 9.1 | GO:0033186 | CAF-1 complex(GO:0033186) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 26.8 | GO:0003688 | DNA replication origin binding(GO:0003688) |
3.7 | 21.9 | GO:0031493 | nucleosomal histone binding(GO:0031493) |
2.3 | 18.2 | GO:0050786 | Toll-like receptor 4 binding(GO:0035662) RAGE receptor binding(GO:0050786) |
3.4 | 16.9 | GO:0016728 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
3.7 | 14.6 | GO:0071987 | WD40-repeat domain binding(GO:0071987) |
0.3 | 12.5 | GO:0004003 | ATP-dependent DNA helicase activity(GO:0004003) |
1.3 | 11.4 | GO:0001135 | transcription factor activity, RNA polymerase II transcription factor recruiting(GO:0001135) |
1.1 | 9.1 | GO:0070087 | chromo shadow domain binding(GO:0070087) |
0.2 | 8.8 | GO:0070888 | E-box binding(GO:0070888) |
0.1 | 8.7 | GO:0004386 | helicase activity(GO:0004386) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 57.3 | PID E2F PATHWAY | E2F transcription factor network |
0.5 | 18.2 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.3 | 14.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
0.3 | 11.5 | PID ATR PATHWAY | ATR signaling pathway |
1.1 | 10.2 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.2 | 8.7 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 5.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 4.8 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 2.7 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 2.1 | PID RAS PATHWAY | Regulation of Ras family activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 39.3 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
1.9 | 33.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 14.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
1.0 | 13.5 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
0.7 | 11.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
1.1 | 10.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.3 | 8.8 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.3 | 8.7 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.4 | 5.1 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.0 | 4.5 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |