avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Egr3 | mm10_v2_chr14_+_70077375_70077445 | -0.10 | 5.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_81975742 Show fit | 9.73 |
ENSMUST00000029645.8
|
tryptophan 2,3-dioxygenase |
|
chr13_-_41847626 Show fit | 5.52 |
ENSMUST00000121404.1
|
androgen dependent TFPI regulating protein |
|
chr13_-_41847599 Show fit | 4.95 |
ENSMUST00000179758.1
|
androgen dependent TFPI regulating protein |
|
chr13_-_41847482 Show fit | 4.92 |
ENSMUST00000072012.3
|
androgen dependent TFPI regulating protein |
|
chr10_-_68278713 Show fit | 4.33 |
ENSMUST00000020106.7
|
AT rich interactive domain 5B (MRF1-like) |
|
chr2_-_148045891 Show fit | 3.50 |
ENSMUST00000109964.1
|
forkhead box A2 |
|
chr6_-_124542281 Show fit | 3.20 |
ENSMUST00000159463.1
ENSMUST00000162844.1 ENSMUST00000160505.1 ENSMUST00000162443.1 |
complement component 1, s subcomponent |
|
chr11_-_98775333 Show fit | 2.87 |
ENSMUST00000064941.6
|
nuclear receptor subfamily 1, group D, member 1 |
|
chr3_-_138131356 Show fit | 2.50 |
ENSMUST00000029805.8
|
microsomal triglyceride transfer protein |
|
chr2_-_173119402 Show fit | 2.24 |
ENSMUST00000094287.3
ENSMUST00000179693.1 |
CCCTC-binding factor (zinc finger protein)-like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 9.7 | GO:0019442 | tryptophan catabolic process to acetyl-CoA(GO:0019442) |
0.5 | 4.3 | GO:0060613 | fat pad development(GO:0060613) |
1.2 | 3.5 | GO:0045014 | carbon catabolite repression of transcription(GO:0045013) negative regulation of transcription by glucose(GO:0045014) |
0.6 | 2.9 | GO:0070859 | positive regulation of bile acid biosynthetic process(GO:0070859) positive regulation of bile acid metabolic process(GO:1904253) |
0.0 | 2.9 | GO:0046580 | negative regulation of Ras protein signal transduction(GO:0046580) |
0.4 | 2.5 | GO:0034197 | acylglycerol transport(GO:0034196) triglyceride transport(GO:0034197) |
0.2 | 2.2 | GO:0051045 | negative regulation of membrane protein ectodomain proteolysis(GO:0051045) |
0.1 | 2.2 | GO:0043046 | regulation of gene expression by genetic imprinting(GO:0006349) DNA methylation involved in gamete generation(GO:0043046) |
0.1 | 2.2 | GO:0072348 | sulfur compound transport(GO:0072348) |
0.5 | 2.1 | GO:0048807 | female genitalia morphogenesis(GO:0048807) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.5 | GO:0031528 | microvillus membrane(GO:0031528) |
0.1 | 2.1 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.0 | 1.7 | GO:0032587 | ruffle membrane(GO:0032587) |
0.4 | 1.4 | GO:0097059 | CNTFR-CLCF1 complex(GO:0097059) |
0.2 | 1.4 | GO:0042825 | TAP complex(GO:0042825) |
0.1 | 1.4 | GO:0032156 | septin cytoskeleton(GO:0032156) |
0.0 | 1.3 | GO:0005614 | interstitial matrix(GO:0005614) |
0.0 | 1.2 | GO:0005581 | collagen trimer(GO:0005581) |
0.2 | 1.1 | GO:0000214 | tRNA-intron endonuclease complex(GO:0000214) |
0.0 | 1.1 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 9.7 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.0 | 5.4 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 4.1 | GO:0016874 | ligase activity(GO:0016874) |
0.1 | 3.5 | GO:0001205 | transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205) |
0.1 | 2.9 | GO:0001222 | transcription corepressor binding(GO:0001222) |
0.0 | 2.7 | GO:0001784 | phosphotyrosine binding(GO:0001784) |
0.1 | 2.5 | GO:0034185 | apolipoprotein binding(GO:0034185) |
0.0 | 2.5 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
0.7 | 2.2 | GO:0030977 | taurine binding(GO:0030977) |
0.2 | 2.2 | GO:0000774 | adenyl-nucleotide exchange factor activity(GO:0000774) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 2.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 2.9 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.1 | 2.5 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 1.6 | PID IFNG PATHWAY | IFN-gamma pathway |
0.0 | 1.4 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 1.2 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.1 | 1.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.8 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.0 | 0.8 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 9.7 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 4.9 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 3.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.4 | 3.2 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 3.0 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.9 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.1 | 2.5 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 2.2 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 1.4 | REACTOME CALNEXIN CALRETICULIN CYCLE | Genes involved in Calnexin/calreticulin cycle |
0.1 | 1.2 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |