avrg: GSE58827: Dynamics of the Mouse Liver
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSMUSG00000036461.9 | E74-like factor 1 | |
ENSMUSG00000037174.12 | E74-like factor 2 | |
ENSMUSG00000006311.8 | ets variant 2 | |
ENSMUSG00000031103.6 | E74-like factor 4 (ets domain transcription factor) |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Elf4 | mm10_v2_chrX_-_48454152_48454193 | 0.49 | 2.4e-03 | Click! |
Elf2 | mm10_v2_chr3_-_51340555_51340584 | 0.29 | 8.3e-02 | Click! |
Elf1 | mm10_v2_chr14_+_79515618_79515694 | 0.12 | 4.9e-01 | Click! |
Etv2 | mm10_v2_chr7_-_30635852_30635852 | 0.12 | 5.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_118620763 Show fit | 19.44 |
ENSMUST00000071972.4
|
WD repeat domain 65 |
|
chr11_+_87793722 Show fit | 12.29 |
ENSMUST00000143021.2
|
myeloperoxidase |
|
chr2_-_26021532 Show fit | 12.26 |
ENSMUST00000136750.1
|
ubiquitin associated domain containing 1 |
|
chr8_+_72761868 Show fit | 11.77 |
ENSMUST00000058099.8
|
coagulation factor II (thrombin) receptor-like 3 |
|
chr16_-_18811972 Show fit | 11.40 |
ENSMUST00000000028.7
ENSMUST00000115585.1 |
cell division cycle 45 |
|
chr11_+_87793470 Show fit | 11.35 |
ENSMUST00000020779.4
|
myeloperoxidase |
|
chr2_-_26021679 Show fit | 10.89 |
ENSMUST00000036509.7
|
ubiquitin associated domain containing 1 |
|
chr7_-_24760311 Show fit | 10.34 |
ENSMUST00000063956.5
|
CD177 antigen |
|
chr10_+_79879614 Show fit | 10.06 |
ENSMUST00000006679.8
|
proteinase 3 |
|
chr8_-_85380964 Show fit | 9.98 |
ENSMUST00000122452.1
|
myosin light chain kinase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 44.8 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
0.6 | 40.0 | GO:0002181 | cytoplasmic translation(GO:0002181) |
1.5 | 33.9 | GO:0000028 | ribosomal small subunit assembly(GO:0000028) |
0.2 | 30.3 | GO:0000375 | RNA splicing, via transesterification reactions(GO:0000375) |
8.8 | 26.4 | GO:0002148 | hypochlorous acid metabolic process(GO:0002148) hypochlorous acid biosynthetic process(GO:0002149) |
0.7 | 26.4 | GO:0051310 | metaphase plate congression(GO:0051310) |
0.6 | 24.5 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
0.5 | 20.3 | GO:0006406 | mRNA export from nucleus(GO:0006406) mRNA-containing ribonucleoprotein complex export from nucleus(GO:0071427) |
0.7 | 19.2 | GO:0034724 | DNA replication-independent nucleosome organization(GO:0034724) |
4.6 | 18.4 | GO:0006014 | D-ribose metabolic process(GO:0006014) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 82.1 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
1.1 | 56.5 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.1 | 42.2 | GO:0005813 | centrosome(GO:0005813) |
1.7 | 34.1 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.5 | 30.6 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.3 | 30.5 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
0.5 | 28.9 | GO:0005871 | kinesin complex(GO:0005871) |
0.2 | 27.7 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
1.7 | 27.2 | GO:0042582 | primary lysosome(GO:0005766) azurophil granule(GO:0042582) |
2.0 | 24.3 | GO:0005687 | U4 snRNP(GO:0005687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 74.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 52.9 | GO:0003723 | RNA binding(GO:0003723) |
0.6 | 31.0 | GO:0019843 | rRNA binding(GO:0019843) |
0.4 | 30.7 | GO:0003777 | microtubule motor activity(GO:0003777) |
2.8 | 27.8 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
1.7 | 23.3 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.1 | 22.1 | GO:0030695 | GTPase regulator activity(GO:0030695) |
0.2 | 21.2 | GO:0042393 | histone binding(GO:0042393) |
0.1 | 21.0 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.3 | 20.0 | GO:0004601 | peroxidase activity(GO:0004601) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 42.1 | PID ATR PATHWAY | ATR signaling pathway |
1.0 | 41.1 | PID AURORA A PATHWAY | Aurora A signaling |
0.9 | 37.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.6 | 28.3 | PID IL23 PATHWAY | IL23-mediated signaling events |
1.3 | 25.9 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.3 | 21.9 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.5 | 21.1 | PID PLK1 PATHWAY | PLK1 signaling events |
0.5 | 18.3 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.2 | 16.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.4 | 16.6 | PID IL2 STAT5 PATHWAY | IL2 signaling events mediated by STAT5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 76.0 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
1.2 | 63.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.6 | 59.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
2.2 | 34.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.7 | 32.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
1.2 | 31.9 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 28.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.6 | 25.9 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.5 | 25.3 | REACTOME THROMBIN SIGNALLING THROUGH PROTEINASE ACTIVATED RECEPTORS PARS | Genes involved in Thrombin signalling through proteinase activated receptors (PARs) |
1.1 | 22.8 | REACTOME INFLAMMASOMES | Genes involved in Inflammasomes |