avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Emx2 | mm10_v2_chr19_+_59458372_59458450 | -0.35 | 3.8e-02 | Click! |
Emx1 | mm10_v2_chr6_+_85187438_85187510 | -0.30 | 7.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_39287074 Show fit | 9.82 |
ENSMUST00000003137.8
|
cytochrome P450, family 2, subfamily c, polypeptide 29 |
|
chr3_-_81975742 Show fit | 6.66 |
ENSMUST00000029645.8
|
tryptophan 2,3-dioxygenase |
|
chr7_-_68275098 Show fit | 6.21 |
ENSMUST00000135564.1
|
predicted gene 16157 |
|
chr19_-_39463067 Show fit | 5.12 |
ENSMUST00000035488.2
|
cytochrome P450, family 2, subfamily c, polypeptide 38 |
|
chr7_-_48848023 Show fit | 5.08 |
ENSMUST00000032658.6
|
cysteine and glycine-rich protein 3 |
|
chr17_-_36032682 Show fit | 4.61 |
ENSMUST00000102678.4
|
histocompatibility 2, T region locus 23 |
|
chr12_-_98577940 Show fit | 4.59 |
ENSMUST00000110113.1
|
potassium channel, subfamily K, member 10 |
|
chr18_-_38866702 Show fit | 4.28 |
ENSMUST00000115582.1
|
fibroblast growth factor 1 |
|
chr4_-_61439743 Show fit | 4.20 |
ENSMUST00000095049.4
|
major urinary protein 15 |
|
chr5_-_89457763 Show fit | 3.90 |
ENSMUST00000049209.8
|
group specific component |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 23.4 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
1.7 | 6.9 | GO:2000795 | negative regulation of epithelial cell proliferation involved in lung morphogenesis(GO:2000795) |
2.2 | 6.7 | GO:0019442 | tryptophan catabolic process to acetyl-CoA(GO:0019442) |
0.9 | 5.3 | GO:0072592 | oxygen metabolic process(GO:0072592) |
1.7 | 5.1 | GO:1903919 | regulation of actin filament severing(GO:1903918) negative regulation of actin filament severing(GO:1903919) |
1.2 | 4.6 | GO:0002489 | antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway(GO:0002488) antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent(GO:0002489) positive regulation of CD8-positive, alpha-beta T cell proliferation(GO:2000566) |
0.3 | 4.6 | GO:0030322 | stabilization of membrane potential(GO:0030322) |
0.9 | 4.3 | GO:1901509 | regulation of endothelial tube morphogenesis(GO:1901509) |
0.2 | 3.9 | GO:0042359 | vitamin D metabolic process(GO:0042359) |
0.1 | 3.5 | GO:0007339 | binding of sperm to zona pellucida(GO:0007339) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 22.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.3 | 6.9 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
0.0 | 5.6 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.4 | 4.6 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.1 | 3.8 | GO:0055038 | recycling endosome membrane(GO:0055038) |
0.0 | 3.8 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.9 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 2.4 | GO:0030496 | midbody(GO:0030496) |
0.0 | 2.3 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 2.1 | GO:0044798 | nuclear transcription factor complex(GO:0044798) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 14.9 | GO:0033695 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.3 | 8.5 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.2 | 7.0 | GO:0001106 | RNA polymerase II transcription corepressor activity(GO:0001106) |
1.7 | 6.7 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.8 | 5.1 | GO:0061629 | RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629) |
0.5 | 5.1 | GO:0004499 | N,N-dimethylaniline monooxygenase activity(GO:0004499) |
0.4 | 4.6 | GO:0030881 | beta-2-microglobulin binding(GO:0030881) |
0.3 | 4.6 | GO:0022841 | potassium ion leak channel activity(GO:0022841) |
0.3 | 4.3 | GO:0044548 | S100 protein binding(GO:0044548) |
1.3 | 3.9 | GO:1902271 | D3 vitamins binding(GO:1902271) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 4.6 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 2.9 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 2.7 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.0 | 1.1 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.0 | 0.8 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.5 | PID NECTIN PATHWAY | Nectin adhesion pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.9 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.4 | 6.7 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.4 | 4.6 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.1 | 4.5 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.3 | 4.3 | REACTOME FGFR4 LIGAND BINDING AND ACTIVATION | Genes involved in FGFR4 ligand binding and activation |
0.1 | 3.0 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.2 | 2.3 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.1 | 2.3 | REACTOME IL RECEPTOR SHC SIGNALING | Genes involved in Interleukin receptor SHC signaling |
0.2 | 2.0 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.1 | 2.0 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |