avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
En2 | mm10_v2_chr5_+_28165690_28165717 | -0.28 | 9.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_127898515 Show fit | 9.28 |
ENSMUST00000047134.7
|
4short chain dehydrogenase/reductase family 9C, member 7 |
|
chr3_+_60081861 Show fit | 5.10 |
ENSMUST00000029326.5
|
succinate receptor 1 |
|
chr10_-_109010955 Show fit | 4.28 |
ENSMUST00000105276.1
ENSMUST00000064054.7 |
synaptotagmin I |
|
chr19_-_7966000 Show fit | 4.14 |
ENSMUST00000182102.1
ENSMUST00000075619.4 |
solute carrier family 22, member 27 |
|
chr2_-_148045891 Show fit | 3.38 |
ENSMUST00000109964.1
|
forkhead box A2 |
|
chr1_+_127729405 Show fit | 3.36 |
ENSMUST00000038006.6
|
amino carboxymuconate semialdehyde decarboxylase |
|
chr5_+_135106881 Show fit | 3.15 |
ENSMUST00000005507.3
|
MLX interacting protein-like |
|
chr17_-_83846769 Show fit | 3.05 |
ENSMUST00000000687.7
|
3-hydroxyanthranilate 3,4-dioxygenase |
|
chr14_+_33941021 Show fit | 2.94 |
ENSMUST00000100720.1
|
growth differentiation factor 2 |
|
chr12_-_84450944 Show fit | 2.91 |
ENSMUST00000085192.5
|
aldehyde dehydrogenase family 6, subfamily A1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 6.4 | GO:0046874 | quinolinate metabolic process(GO:0046874) |
0.5 | 5.3 | GO:0005513 | detection of calcium ion(GO:0005513) |
0.1 | 4.3 | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I(GO:0002474) |
0.3 | 4.1 | GO:0015747 | urate transport(GO:0015747) |
0.2 | 4.1 | GO:0006120 | mitochondrial electron transport, NADH to ubiquinone(GO:0006120) |
1.1 | 3.4 | GO:0045014 | carbon catabolite repression of transcription(GO:0045013) negative regulation of transcription by glucose(GO:0045014) |
0.3 | 3.2 | GO:0070862 | negative regulation of protein exit from endoplasmic reticulum(GO:0070862) negative regulation of retrograde protein transport, ER to cytosol(GO:1904153) |
0.1 | 3.2 | GO:0042773 | ATP synthesis coupled electron transport(GO:0042773) |
0.4 | 3.1 | GO:0090324 | negative regulation of oxidative phosphorylation(GO:0090324) |
1.0 | 2.9 | GO:0006210 | pyrimidine nucleobase catabolic process(GO:0006208) thymine catabolic process(GO:0006210) thymine metabolic process(GO:0019859) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.1 | GO:0070469 | respiratory chain(GO:0070469) |
0.2 | 8.6 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 7.8 | GO:0031966 | mitochondrial membrane(GO:0031966) |
0.5 | 5.9 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.2 | 4.3 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 4.0 | GO:0072562 | blood microparticle(GO:0072562) |
0.4 | 3.4 | GO:0000835 | ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) |
0.0 | 3.4 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.0 | 3.0 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.1 | 2.6 | GO:0030673 | axolemma(GO:0030673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.7 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
0.3 | 8.1 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.5 | 7.0 | GO:0030881 | beta-2-microglobulin binding(GO:0030881) |
1.1 | 4.3 | GO:0030348 | syntaxin-3 binding(GO:0030348) |
0.3 | 4.1 | GO:1901702 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
0.0 | 3.7 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.1 | 3.5 | GO:0001540 | beta-amyloid binding(GO:0001540) |
0.1 | 3.4 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.1 | 3.4 | GO:0001205 | transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205) |
0.1 | 3.0 | GO:0019825 | oxygen binding(GO:0019825) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 3.4 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.1 | 2.9 | PID ALK1 PATHWAY | ALK1 signaling events |
0.1 | 2.4 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 1.9 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 1.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.7 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
0.1 | 1.6 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 1.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 1.3 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.4 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.3 | 5.7 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.4 | 4.3 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.1 | 4.2 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 2.6 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.2 | 1.9 | REACTOME ELEVATION OF CYTOSOLIC CA2 LEVELS | Genes involved in Elevation of cytosolic Ca2+ levels |
0.2 | 1.9 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.0 | 1.8 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.0 | 1.8 | REACTOME DESTABILIZATION OF MRNA BY AUF1 HNRNP D0 | Genes involved in Destabilization of mRNA by AUF1 (hnRNP D0) |
0.1 | 1.7 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |