avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Esr2 | mm10_v2_chr12_-_76177251_76177265 | -0.46 | 5.0e-03 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 16.1 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
3.9 | 15.6 | GO:0010982 | regulation of high-density lipoprotein particle clearance(GO:0010982) |
0.4 | 15.4 | GO:0032981 | NADH dehydrogenase complex assembly(GO:0010257) mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031) |
0.4 | 13.8 | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I(GO:0002474) |
2.6 | 12.8 | GO:0009730 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
3.0 | 12.1 | GO:0010901 | regulation of very-low-density lipoprotein particle remodeling(GO:0010901) |
0.4 | 11.4 | GO:0035634 | response to stilbenoid(GO:0035634) |
1.5 | 10.8 | GO:0070777 | D-aspartate transport(GO:0070777) D-aspartate import(GO:0070779) |
0.2 | 10.7 | GO:0019369 | arachidonic acid metabolic process(GO:0019369) |
1.0 | 10.6 | GO:0052696 | flavonoid glucuronidation(GO:0052696) xenobiotic glucuronidation(GO:0052697) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 50.1 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 44.7 | GO:0005739 | mitochondrion(GO:0005739) |
0.0 | 29.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
1.9 | 21.0 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.0 | 17.6 | GO:0005764 | lytic vacuole(GO:0000323) lysosome(GO:0005764) |
1.5 | 17.0 | GO:0042627 | chylomicron(GO:0042627) |
0.1 | 16.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.3 | 16.1 | GO:0030964 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.6 | 13.6 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.1 | 13.5 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 19.0 | GO:0060228 | phosphatidylcholine-sterol O-acyltransferase activator activity(GO:0060228) |
0.5 | 18.7 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.6 | 17.9 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
1.0 | 16.4 | GO:0046977 | TAP binding(GO:0046977) |
4.1 | 16.3 | GO:0070653 | high-density lipoprotein particle receptor binding(GO:0070653) |
0.2 | 15.4 | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811) |
0.6 | 12.1 | GO:0015125 | bile acid transmembrane transporter activity(GO:0015125) |
0.3 | 11.7 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.2 | 11.5 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.1 | 11.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.4 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 15.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.3 | 14.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 10.6 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.1 | 7.2 | PID LKB1 PATHWAY | LKB1 signaling events |
0.2 | 6.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.2 | 5.6 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.1 | 4.4 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 3.7 | PID BMP PATHWAY | BMP receptor signaling |
0.2 | 3.4 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 35.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.4 | 26.4 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.3 | 25.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 25.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.2 | 15.0 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
0.4 | 13.9 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
1.0 | 13.0 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.2 | 10.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.7 | 10.4 | REACTOME INITIAL TRIGGERING OF COMPLEMENT | Genes involved in Initial triggering of complement |
0.5 | 10.2 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |