avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Etv5 | mm10_v2_chr16_-_22439719_22439733 | -0.81 | 3.2e-09 | Click! |
Etv1 | mm10_v2_chr12_+_38781093_38781129 | -0.77 | 4.4e-08 | Click! |
Gabpa | mm10_v2_chr16_+_84834901_84834941 | -0.43 | 8.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_121327672 Show fit | 14.07 |
ENSMUST00000159085.1
ENSMUST00000159125.1 ENSMUST00000161818.1 |
insulin induced gene 2 |
|
chr9_-_22002599 Show fit | 13.72 |
ENSMUST00000115336.2
ENSMUST00000044926.5 |
coiled-coil domain containing 151 |
|
chr1_-_121327734 Show fit | 13.15 |
ENSMUST00000160968.1
ENSMUST00000162582.1 |
insulin induced gene 2 |
|
chr1_-_121328024 Show fit | 13.09 |
ENSMUST00000003818.7
|
insulin induced gene 2 |
|
chr1_-_121327776 Show fit | 11.96 |
ENSMUST00000160688.1
|
insulin induced gene 2 |
|
chr5_+_151368683 Show fit | 11.02 |
ENSMUST00000181114.1
ENSMUST00000181555.1 |
RIKEN cDNA 1700028E10 gene |
|
chr6_-_85915604 Show fit | 10.92 |
ENSMUST00000174369.1
|
camello-like 1 |
|
chr6_-_85915653 Show fit | 10.76 |
ENSMUST00000161198.2
|
camello-like 1 |
|
chr7_-_79743034 Show fit | 10.53 |
ENSMUST00000032761.7
|
peroxisomal biogenesis factor 11 alpha |
|
chr10_-_40025253 Show fit | 8.80 |
ENSMUST00000163705.2
|
expressed sequence AI317395 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.1 | 52.3 | GO:0060363 | cranial suture morphogenesis(GO:0060363) |
0.6 | 27.8 | GO:0032543 | mitochondrial translation(GO:0032543) |
1.0 | 21.0 | GO:0072663 | protein targeting to peroxisome(GO:0006625) peroxisomal transport(GO:0043574) protein localization to peroxisome(GO:0072662) establishment of protein localization to peroxisome(GO:0072663) |
4.1 | 20.6 | GO:0031437 | regulation of mRNA cleavage(GO:0031437) negative regulation of mRNA cleavage(GO:0031438) regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904720) negative regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904721) |
0.5 | 18.5 | GO:0010257 | NADH dehydrogenase complex assembly(GO:0010257) mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031) |
0.2 | 18.1 | GO:0008033 | tRNA processing(GO:0008033) |
0.8 | 15.4 | GO:1902236 | negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway(GO:1902236) |
0.9 | 15.1 | GO:0000338 | protein deneddylation(GO:0000338) |
0.3 | 14.8 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
0.1 | 14.4 | GO:0006457 | protein folding(GO:0006457) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 119.8 | GO:0005739 | mitochondrion(GO:0005739) |
0.2 | 80.9 | GO:0031966 | mitochondrial membrane(GO:0031966) |
6.6 | 52.6 | GO:0032937 | SREBP-SCAP-Insig complex(GO:0032937) |
0.3 | 32.9 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.5 | 30.9 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 28.2 | GO:0005764 | lytic vacuole(GO:0000323) lysosome(GO:0005764) |
0.6 | 26.4 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.1 | 22.8 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.3 | 21.2 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) |
0.8 | 20.9 | GO:0005782 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 35.4 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.0 | 24.1 | GO:0008134 | transcription factor binding(GO:0008134) |
0.1 | 22.5 | GO:0008236 | serine-type peptidase activity(GO:0008236) |
3.4 | 20.6 | GO:0060698 | endoribonuclease inhibitor activity(GO:0060698) |
0.5 | 16.0 | GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding(GO:0080025) |
0.4 | 15.3 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.0 | 14.9 | GO:0005525 | GTP binding(GO:0005525) |
0.4 | 14.8 | GO:0016922 | ligand-dependent nuclear receptor binding(GO:0016922) |
0.2 | 14.1 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.1 | 13.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 25.2 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.3 | 17.3 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.3 | 12.9 | ST TUMOR NECROSIS FACTOR PATHWAY | Tumor Necrosis Factor Pathway. |
0.3 | 10.1 | PID ARF 3PATHWAY | Arf1 pathway |
0.3 | 9.9 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.1 | 9.2 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.1 | 8.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.3 | 6.3 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.1 | 6.0 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
0.1 | 5.9 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 47.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.7 | 36.0 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.3 | 20.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.5 | 15.9 | REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT | Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT) |
0.2 | 12.9 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
0.3 | 12.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.4 | 11.6 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.1 | 10.5 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.6 | 10.3 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |
0.8 | 10.0 | REACTOME IRAK1 RECRUITS IKK COMPLEX | Genes involved in IRAK1 recruits IKK complex |