avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Foxb1 | mm10_v2_chr9_-_69760924_69760940 | -0.66 | 1.2e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_127898515 Show fit | 9.37 |
ENSMUST00000047134.7
|
4short chain dehydrogenase/reductase family 9C, member 7 |
|
chr19_+_20601958 Show fit | 6.17 |
ENSMUST00000087638.3
|
aldehyde dehydrogenase family 1, subfamily A1 |
|
chr19_-_20727533 Show fit | 4.53 |
ENSMUST00000025656.3
|
aldehyde dehydrogenase family 1, subfamily A7 |
|
chr7_+_119900099 Show fit | 3.76 |
ENSMUST00000106516.1
|
LYR motif containing 1 |
|
chr2_-_94264745 Show fit | 2.99 |
ENSMUST00000134563.1
|
RIKEN cDNA E530001K10 gene |
|
chr2_+_58754910 Show fit | 2.87 |
ENSMUST00000059102.6
|
uridine phosphorylase 2 |
|
chr2_+_58755177 Show fit | 2.78 |
ENSMUST00000102755.3
|
uridine phosphorylase 2 |
|
chr3_-_95904683 Show fit | 2.59 |
ENSMUST00000147962.1
ENSMUST00000036181.8 |
carbonic anhydrase 14 |
|
chr12_-_84450944 Show fit | 2.42 |
ENSMUST00000085192.5
|
aldehyde dehydrogenase family 6, subfamily A1 |
|
chr3_-_146596588 Show fit | 2.37 |
ENSMUST00000029836.4
|
deoxyribonuclease II beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 6.2 | GO:0042904 | 9-cis-retinoic acid biosynthetic process(GO:0042904) 9-cis-retinoic acid metabolic process(GO:0042905) |
0.3 | 4.5 | GO:0042573 | retinoic acid metabolic process(GO:0042573) |
0.0 | 4.4 | GO:0009166 | nucleotide catabolic process(GO:0009166) |
0.0 | 3.6 | GO:0006342 | chromatin silencing(GO:0006342) |
0.3 | 3.0 | GO:0035021 | negative regulation of Rac protein signal transduction(GO:0035021) |
0.2 | 2.9 | GO:0060501 | positive regulation of epithelial cell proliferation involved in lung morphogenesis(GO:0060501) |
0.5 | 2.7 | GO:0071486 | cellular response to light intensity(GO:0071484) cellular response to high light intensity(GO:0071486) retinal rod cell apoptotic process(GO:0097473) |
0.3 | 2.6 | GO:0015670 | carbon dioxide transport(GO:0015670) |
0.5 | 2.5 | GO:0051919 | positive regulation of fibrinolysis(GO:0051919) |
0.8 | 2.4 | GO:0006210 | pyrimidine nucleobase catabolic process(GO:0006208) thymine catabolic process(GO:0006210) thymine metabolic process(GO:0019859) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 5.7 | GO:0045098 | type III intermediate filament(GO:0045098) |
0.2 | 2.7 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
0.0 | 2.4 | GO:0030496 | midbody(GO:0030496) |
0.5 | 2.1 | GO:0044218 | other organism cell membrane(GO:0044218) other organism membrane(GO:0044279) |
0.1 | 1.9 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.0 | 1.7 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) |
0.0 | 1.4 | GO:0009295 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
0.4 | 1.3 | GO:0043540 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex(GO:0043540) |
0.1 | 1.3 | GO:0005922 | connexon complex(GO:0005922) |
0.0 | 1.3 | GO:0000930 | gamma-tubulin complex(GO:0000930) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 10.7 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
0.4 | 9.4 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
1.1 | 5.7 | GO:0004850 | uridine phosphorylase activity(GO:0004850) |
0.0 | 4.3 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.2 | 2.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
0.6 | 2.4 | GO:0004531 | deoxyribonuclease II activity(GO:0004531) |
0.0 | 2.4 | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor(GO:0016620) |
0.0 | 2.3 | GO:0005178 | integrin binding(GO:0005178) |
0.2 | 2.1 | GO:1990405 | protein antigen binding(GO:1990405) |
0.3 | 1.7 | GO:0015467 | G-protein activated inward rectifier potassium channel activity(GO:0015467) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.1 | 2.7 | SA TRKA RECEPTOR | The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. |
0.1 | 2.1 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 1.7 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 1.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 0.9 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 0.6 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 0.6 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 6.2 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.3 | 5.7 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.1 | 3.0 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.2 | 2.7 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |
0.0 | 2.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 2.4 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 1.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 1.7 | REACTOME IRAK1 RECRUITS IKK COMPLEX | Genes involved in IRAK1 recruits IKK complex |
0.0 | 1.7 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 1.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |