avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Foxj3 | mm10_v2_chr4_+_119539652_119539698 | 0.79 | 7.3e-09 | Click! |
Tbl1xr1 | mm10_v2_chr3_+_22076644_22076681 | 0.62 | 6.3e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr18_+_54422286 Show fit | 20.82 |
ENSMUST00000181269.1
|
Redrum, erythroid developmental long intergenic non-protein coding transcript |
|
chr1_+_174172738 Show fit | 20.70 |
ENSMUST00000027817.7
|
spectrin alpha, erythrocytic 1 |
|
chr11_-_55185029 Show fit | 16.35 |
ENSMUST00000039305.5
|
solute carrier family 36 (proton/amino acid symporter), member 2 |
|
chr16_+_36184082 Show fit | 16.33 |
ENSMUST00000114858.1
|
predicted gene 5483 |
|
chr4_+_134864536 Show fit | 14.69 |
ENSMUST00000030627.7
|
Rh blood group, D antigen |
|
chr6_-_41704339 Show fit | 14.18 |
ENSMUST00000031899.8
|
Kell blood group |
|
chr3_-_106167564 Show fit | 13.40 |
ENSMUST00000063062.8
|
chitinase 3-like 3 |
|
chr7_-_100514800 Show fit | 13.26 |
ENSMUST00000054923.7
|
DnaJ (Hsp40) related, subfamily B, member 13 |
|
chr10_+_79886302 Show fit | 12.57 |
ENSMUST00000046091.5
|
elastase, neutrophil expressed |
|
chrX_-_7964166 Show fit | 12.41 |
ENSMUST00000128449.1
|
GATA binding protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 51.7 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
0.6 | 27.0 | GO:0009409 | response to cold(GO:0009409) |
1.8 | 24.8 | GO:0015816 | glycine transport(GO:0015816) |
2.9 | 23.3 | GO:0015671 | oxygen transport(GO:0015671) |
7.5 | 22.5 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.2 | 21.5 | GO:0051028 | mRNA transport(GO:0051028) |
3.4 | 20.2 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
0.3 | 19.6 | GO:0051225 | spindle assembly(GO:0051225) |
2.3 | 18.0 | GO:0070944 | neutrophil mediated killing of bacterium(GO:0070944) |
5.9 | 17.6 | GO:0030221 | basophil differentiation(GO:0030221) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 45.5 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
4.7 | 37.9 | GO:0005833 | hemoglobin complex(GO:0005833) |
0.1 | 31.2 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.3 | 27.2 | GO:0016363 | nuclear matrix(GO:0016363) |
0.3 | 25.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
1.3 | 24.6 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
1.8 | 22.0 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.1 | 21.8 | GO:0045121 | membrane raft(GO:0045121) membrane microdomain(GO:0098857) |
0.3 | 20.2 | GO:0000786 | nucleosome(GO:0000786) DNA packaging complex(GO:0044815) |
0.2 | 19.3 | GO:0036126 | sperm flagellum(GO:0036126) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 37.3 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
0.3 | 34.3 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
2.4 | 26.2 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
6.4 | 25.6 | GO:0031721 | hemoglobin alpha binding(GO:0031721) |
0.1 | 23.7 | GO:0003779 | actin binding(GO:0003779) |
2.3 | 23.1 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.4 | 22.5 | GO:0070888 | E-box binding(GO:0070888) |
0.8 | 21.4 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
1.4 | 21.3 | GO:0008301 | DNA binding, bending(GO:0008301) |
2.7 | 19.2 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 58.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.8 | 51.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.6 | 42.3 | PID E2F PATHWAY | E2F transcription factor network |
0.2 | 40.3 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.7 | 24.8 | PID AURORA A PATHWAY | Aurora A signaling |
0.3 | 21.1 | PID FCER1 PATHWAY | Fc-epsilon receptor I signaling in mast cells |
0.5 | 19.2 | PID ATR PATHWAY | ATR signaling pathway |
0.5 | 18.7 | PID AURORA B PATHWAY | Aurora B signaling |
0.4 | 17.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.5 | 16.7 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 84.0 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.9 | 44.2 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
1.0 | 43.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.3 | 34.7 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.5 | 28.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.3 | 23.9 | REACTOME CELL SURFACE INTERACTIONS AT THE VASCULAR WALL | Genes involved in Cell surface interactions at the vascular wall |
0.4 | 23.7 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.3 | 22.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.4 | 22.4 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.2 | 22.0 | REACTOME G ALPHA Q SIGNALLING EVENTS | Genes involved in G alpha (q) signalling events |