avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Foxp3 | mm10_v2_chrX_+_7580483_7580491 | -0.64 | 2.4e-05 | Click! |
Foxp2 | mm10_v2_chr6_+_15185439_15185452 | 0.23 | 1.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_81975742 Show fit | 6.03 |
ENSMUST00000029645.8
|
tryptophan 2,3-dioxygenase |
|
chr9_+_53301571 Show fit | 2.99 |
ENSMUST00000051014.1
|
exophilin 5 |
|
chr1_-_130661584 Show fit | 2.95 |
ENSMUST00000137276.2
|
complement component 4 binding protein |
|
chr1_-_139781236 Show fit | 2.93 |
ENSMUST00000027612.8
ENSMUST00000111989.2 ENSMUST00000111986.2 |
predicted gene 4788 |
|
chr1_-_162898665 Show fit | 2.90 |
ENSMUST00000111510.1
ENSMUST00000045902.6 |
flavin containing monooxygenase 2 |
|
chr1_-_162898484 Show fit | 2.79 |
ENSMUST00000143123.1
|
flavin containing monooxygenase 2 |
|
chr1_-_130661613 Show fit | 2.77 |
ENSMUST00000027657.7
|
complement component 4 binding protein |
|
chr17_+_36942910 Show fit | 2.44 |
ENSMUST00000040498.5
|
ring finger protein 39 |
|
chr14_-_51913393 Show fit | 2.28 |
ENSMUST00000004673.7
ENSMUST00000111632.3 |
N-myc downstream regulated gene 2 |
|
chr4_-_19922599 Show fit | 2.22 |
ENSMUST00000029900.5
|
ATPase, H+ transporting, lysosomal V0 subunit D2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.3 | GO:0006958 | complement activation, classical pathway(GO:0006958) |
2.0 | 6.0 | GO:0019442 | tryptophan catabolic process to acetyl-CoA(GO:0019442) |
0.9 | 5.7 | GO:0072592 | oxygen metabolic process(GO:0072592) |
0.2 | 4.9 | GO:0042572 | retinol metabolic process(GO:0042572) |
0.0 | 4.5 | GO:0055088 | lipid homeostasis(GO:0055088) |
0.3 | 4.2 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.8 | 4.1 | GO:0031438 | regulation of mRNA cleavage(GO:0031437) negative regulation of mRNA cleavage(GO:0031438) regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904720) negative regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904721) |
0.1 | 3.3 | GO:0008211 | glucocorticoid metabolic process(GO:0008211) |
0.4 | 3.2 | GO:0033227 | dsRNA transport(GO:0033227) |
0.5 | 3.0 | GO:0071985 | multivesicular body sorting pathway(GO:0071985) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.3 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.2 | 5.9 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.4 | 4.8 | GO:0005579 | membrane attack complex(GO:0005579) |
0.0 | 4.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.2 | 3.4 | GO:0042627 | chylomicron(GO:0042627) |
0.0 | 3.4 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.4 | 3.1 | GO:0045098 | type III intermediate filament(GO:0045098) |
0.2 | 2.9 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
0.7 | 2.1 | GO:0070195 | growth hormone receptor complex(GO:0070195) |
0.2 | 2.1 | GO:0042567 | alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 6.0 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.0 | 6.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.6 | 5.7 | GO:0004499 | N,N-dimethylaniline monooxygenase activity(GO:0004499) |
0.7 | 4.1 | GO:0060698 | endoribonuclease inhibitor activity(GO:0060698) |
0.1 | 4.1 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
0.6 | 4.0 | GO:0052650 | NADP-retinol dehydrogenase activity(GO:0052650) |
0.1 | 3.6 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.5 | 3.2 | GO:0051033 | nucleic acid transmembrane transporter activity(GO:0051032) RNA transmembrane transporter activity(GO:0051033) |
0.6 | 3.1 | GO:0004850 | uridine phosphorylase activity(GO:0004850) |
0.2 | 2.9 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.1 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 4.6 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 4.6 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 2.9 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.1 | 2.1 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 1.6 | PID FGF PATHWAY | FGF signaling pathway |
0.0 | 1.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 1.3 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 1.2 | PID ALK1 PATHWAY | ALK1 signaling events |
0.1 | 1.0 | ST G ALPHA S PATHWAY | G alpha s Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.0 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.3 | 6.0 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.2 | 5.4 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.0 | 3.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.2 | 3.1 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.2 | 3.1 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 3.1 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.1 | 3.0 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.1 | 2.7 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.1 | 2.6 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |