avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Alx3 | mm10_v2_chr3_+_107595031_107595164 | -0.22 | 1.9e-01 | Click! |
Gbx1 | mm10_v2_chr5_-_24527276_24527276 | 0.04 | 8.2e-01 | Click! |
Nobox | mm10_v2_chr6_-_43307236_43307236 | -0.02 | 9.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_99322943 Show fit | 7.06 |
ENSMUST00000038004.2
|
keratin 25 |
|
chr19_+_40089688 Show fit | 6.44 |
ENSMUST00000068094.6
ENSMUST00000080171.2 |
cytochrome P450, family 2, subfamily c, polypeptide 50 |
|
chr19_-_7966000 Show fit | 6.20 |
ENSMUST00000182102.1
ENSMUST00000075619.4 |
solute carrier family 22, member 27 |
|
chr13_+_4434306 Show fit | 5.93 |
ENSMUST00000021630.8
|
aldo-keto reductase family 1, member C6 |
|
chr10_+_127898515 Show fit | 5.44 |
ENSMUST00000047134.7
|
4short chain dehydrogenase/reductase family 9C, member 7 |
|
chr6_+_37870786 Show fit | 2.62 |
ENSMUST00000120428.1
ENSMUST00000031859.7 |
tripartite motif-containing 24 |
|
chr14_+_33941021 Show fit | 2.60 |
ENSMUST00000100720.1
|
growth differentiation factor 2 |
|
chr9_-_71163224 Show fit | 2.58 |
ENSMUST00000074465.2
|
aquaporin 9 |
|
chr3_+_62419668 Show fit | 2.31 |
ENSMUST00000161057.1
|
Rho guanine nucleotide exchange factor (GEF) 26 |
|
chr19_+_26749726 Show fit | 2.20 |
ENSMUST00000175842.1
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.7 | GO:0031069 | hair follicle morphogenesis(GO:0031069) |
0.6 | 6.4 | GO:0043651 | linoleic acid metabolic process(GO:0043651) |
0.4 | 6.2 | GO:0015747 | urate transport(GO:0015747) |
2.0 | 5.9 | GO:0009753 | response to jasmonic acid(GO:0009753) cellular response to jasmonic acid stimulus(GO:0071395) |
0.1 | 4.0 | GO:0090036 | regulation of protein kinase C signaling(GO:0090036) |
0.0 | 3.0 | GO:0003298 | physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049) |
0.3 | 2.9 | GO:0035887 | aortic smooth muscle cell differentiation(GO:0035887) |
0.6 | 2.6 | GO:0015851 | nucleobase transport(GO:0015851) pyrimidine nucleobase transport(GO:0015855) |
0.4 | 2.6 | GO:0070562 | regulation of vitamin D receptor signaling pathway(GO:0070562) |
0.1 | 2.6 | GO:0045603 | positive regulation of endothelial cell differentiation(GO:0045603) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.7 | GO:0005882 | intermediate filament(GO:0005882) |
0.2 | 2.9 | GO:0071564 | npBAF complex(GO:0071564) |
0.4 | 2.6 | GO:0005726 | perichromatin fibrils(GO:0005726) |
0.0 | 2.2 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 2.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 2.0 | GO:0002102 | podosome(GO:0002102) |
0.1 | 1.9 | GO:0005614 | interstitial matrix(GO:0005614) |
0.0 | 1.8 | GO:0001650 | fibrillar center(GO:0001650) |
0.4 | 1.7 | GO:0071953 | elastic fiber(GO:0071953) |
0.0 | 1.6 | GO:0045271 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.0 | GO:0005198 | structural molecule activity(GO:0005198) |
1.6 | 6.4 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
0.4 | 6.2 | GO:1901702 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
2.0 | 5.9 | GO:0047006 | 17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity(GO:0047006) |
0.3 | 5.8 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
0.1 | 3.7 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
0.1 | 3.0 | GO:0050136 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.0 | 2.7 | GO:0001105 | RNA polymerase II transcription coactivator activity(GO:0001105) |
0.5 | 2.6 | GO:0005350 | purine nucleobase transmembrane transporter activity(GO:0005345) pyrimidine nucleobase transmembrane transporter activity(GO:0005350) nucleobase transmembrane transporter activity(GO:0015205) glycerol channel activity(GO:0015254) |
0.4 | 2.6 | GO:0034056 | estrogen response element binding(GO:0034056) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.5 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 3.0 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 2.6 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 1.9 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.3 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 1.2 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 1.1 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 1.0 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.0 | 0.8 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.7 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 2.7 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.2 | 2.6 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.1 | 2.0 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.1 | 1.5 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |
0.2 | 1.3 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |
0.0 | 1.1 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 1.1 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 1.0 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.8 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |