avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Gfi1 | mm10_v2_chr5_-_107723954_107723974 | -0.81 | 1.5e-09 | Click! |
Gfi1b | mm10_v2_chr2_-_28621932_28621982 | -0.81 | 2.1e-09 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_127759780 Show fit | 10.76 |
ENSMUST00000128247.1
|
Protein Rdh9 |
|
chr5_-_87091150 Show fit | 7.79 |
ENSMUST00000154455.1
|
UDP glucuronosyltransferase 2 family, polypeptide B36 |
|
chr6_+_121838514 Show fit | 7.34 |
ENSMUST00000032228.8
|
murinoglobulin 1 |
|
chr6_+_122006798 Show fit | 6.69 |
ENSMUST00000081777.6
|
murinoglobulin 2 |
|
chr8_+_46010596 Show fit | 6.01 |
ENSMUST00000110381.2
|
Lrp2 binding protein |
|
chr15_+_6445320 Show fit | 5.45 |
ENSMUST00000022749.9
|
complement component 9 |
|
chr6_-_127109517 Show fit | 4.95 |
ENSMUST00000039913.8
|
RIKEN cDNA 9630033F20 gene |
|
chr10_-_127370535 Show fit | 4.75 |
ENSMUST00000026472.8
|
inhibin beta-C |
|
chr5_+_90891234 Show fit | 4.61 |
ENSMUST00000031327.8
|
chemokine (C-X-C motif) ligand 1 |
|
chr1_+_167618246 Show fit | 4.49 |
ENSMUST00000111380.1
|
retinoid X receptor gamma |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 14.3 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.8 | 12.6 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.1 | 10.3 | GO:0008360 | regulation of cell shape(GO:0008360) |
0.3 | 9.9 | GO:1901522 | positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522) |
1.7 | 6.6 | GO:0032385 | positive regulation of intracellular lipid transport(GO:0032379) positive regulation of intracellular sterol transport(GO:0032382) positive regulation of intracellular cholesterol transport(GO:0032385) lipid hydroperoxide transport(GO:1901373) |
0.3 | 5.8 | GO:0042573 | retinoic acid metabolic process(GO:0042573) |
0.1 | 5.0 | GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation(GO:0010862) |
0.7 | 4.7 | GO:0072086 | specification of loop of Henle identity(GO:0072086) |
1.5 | 4.6 | GO:0070949 | neutrophil mediated killing of fungus(GO:0070947) regulation of neutrophil mediated cytotoxicity(GO:0070948) regulation of neutrophil mediated killing of symbiont cell(GO:0070949) |
0.3 | 4.5 | GO:0036315 | cellular response to sterol(GO:0036315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 11.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 6.8 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 6.7 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 5.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
1.4 | 5.4 | GO:0044279 | other organism cell membrane(GO:0044218) other organism membrane(GO:0044279) |
0.0 | 4.2 | GO:0032432 | actin filament bundle(GO:0032432) |
0.5 | 4.1 | GO:0045098 | type III intermediate filament(GO:0045098) |
0.3 | 4.1 | GO:0031315 | extrinsic component of mitochondrial outer membrane(GO:0031315) |
0.1 | 4.0 | GO:0045334 | clathrin-coated endocytic vesicle(GO:0045334) |
0.0 | 3.8 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.7 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.0 | 9.8 | GO:0004886 | 9-cis retinoic acid receptor activity(GO:0004886) |
0.2 | 8.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.5 | 7.5 | GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854) |
1.7 | 6.6 | GO:0050632 | propanoyl-CoA C-acyltransferase activity(GO:0033814) propionyl-CoA C2-trimethyltridecanoyltransferase activity(GO:0050632) phosphatidylethanolamine transporter activity(GO:1904121) |
0.2 | 6.3 | GO:0047617 | acyl-CoA hydrolase activity(GO:0047617) |
0.1 | 5.9 | GO:0005160 | transforming growth factor beta receptor binding(GO:0005160) |
0.3 | 5.7 | GO:0034236 | protein kinase A catalytic subunit binding(GO:0034236) |
0.0 | 5.2 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
1.0 | 4.8 | GO:0004850 | uridine phosphorylase activity(GO:0004850) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 10.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 5.3 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.0 | 5.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 5.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 4.9 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 4.1 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.1 | 3.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 3.0 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
0.1 | 2.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 2.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 14.1 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.1 | 12.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.4 | 10.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
0.0 | 6.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.2 | 6.0 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.7 | 5.9 | REACTOME GLYCOPROTEIN HORMONES | Genes involved in Glycoprotein hormones |
0.1 | 5.1 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |
0.1 | 5.0 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
0.3 | 4.8 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.7 | 4.0 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |