avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Glis3 | mm10_v2_chr19_-_28680077_28680122 | -0.32 | 5.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_55561060 Show fit | 2.87 |
ENSMUST00000117701.1
|
DDB1 and CUL4 associated factor 11 |
|
chr14_+_55560904 Show fit | 2.66 |
ENSMUST00000072530.4
ENSMUST00000128490.1 |
DDB1 and CUL4 associated factor 11 |
|
chr6_+_17463826 Show fit | 2.35 |
ENSMUST00000140070.1
|
met proto-oncogene |
|
chr14_+_55560480 Show fit | 2.18 |
ENSMUST00000121622.1
ENSMUST00000143431.1 ENSMUST00000150481.1 |
DDB1 and CUL4 associated factor 11 |
|
chr4_+_144893077 Show fit | 2.16 |
ENSMUST00000154208.1
|
dehydrogenase/reductase (SDR family) member 3 |
|
chr19_+_4711153 Show fit | 2.10 |
ENSMUST00000008991.6
|
spectrin beta, non-erythrocytic 2 |
|
chr13_-_29984219 Show fit | 2.06 |
ENSMUST00000146092.1
|
E2F transcription factor 3 |
|
chr11_+_101468164 Show fit | 1.91 |
ENSMUST00000001347.6
|
Rho family GTPase 2 |
|
chr4_+_144893127 Show fit | 1.90 |
ENSMUST00000142808.1
|
dehydrogenase/reductase (SDR family) member 3 |
|
chr4_+_144892813 Show fit | 1.86 |
ENSMUST00000105744.1
ENSMUST00000171001.1 |
dehydrogenase/reductase (SDR family) member 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.5 | GO:0048387 | negative regulation of retinoic acid receptor signaling pathway(GO:0048387) |
0.8 | 5.6 | GO:0070494 | regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495) |
0.1 | 1.9 | GO:0048672 | positive regulation of collateral sprouting(GO:0048672) |
0.1 | 1.9 | GO:0010971 | positive regulation of G2/M transition of mitotic cell cycle(GO:0010971) |
0.0 | 1.7 | GO:0046856 | phosphatidylinositol dephosphorylation(GO:0046856) |
0.0 | 1.6 | GO:0042147 | retrograde transport, endosome to Golgi(GO:0042147) |
0.2 | 1.4 | GO:0070345 | negative regulation of fat cell proliferation(GO:0070345) |
0.1 | 1.4 | GO:0021692 | cerebellar Purkinje cell layer morphogenesis(GO:0021692) |
0.4 | 1.3 | GO:1905072 | detection of oxygen(GO:0003032) cardiac jelly development(GO:1905072) |
0.3 | 1.3 | GO:0021914 | negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021914) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.3 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.1 | 5.6 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.0 | 3.9 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.3 | 2.1 | GO:0008091 | spectrin(GO:0008091) |
0.0 | 1.6 | GO:0045335 | phagocytic vesicle(GO:0045335) |
0.0 | 1.2 | GO:0035861 | site of double-strand break(GO:0035861) |
0.0 | 1.2 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.1 | 0.9 | GO:0000124 | SAGA complex(GO:0000124) |
0.0 | 0.9 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.2 | 0.8 | GO:0097059 | CNTFR-CLCF1 complex(GO:0097059) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 5.9 | GO:0052650 | NADP-retinol dehydrogenase activity(GO:0052650) |
1.4 | 5.6 | GO:0005008 | hepatocyte growth factor-activated receptor activity(GO:0005008) |
0.0 | 1.8 | GO:0019003 | GDP binding(GO:0019003) |
0.0 | 1.8 | GO:0047485 | protein N-terminus binding(GO:0047485) |
0.2 | 1.7 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
0.2 | 1.3 | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912) |
0.2 | 1.3 | GO:0005534 | galactose binding(GO:0005534) |
0.2 | 1.3 | GO:0045545 | syndecan binding(GO:0045545) |
0.0 | 1.3 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 1.3 | GO:0071837 | HMG box domain binding(GO:0071837) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 5.2 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 2.3 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 2.1 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 2.0 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 1.3 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 1.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.2 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 0.8 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.7 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.2 | 2.1 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 2.1 | REACTOME NCAM SIGNALING FOR NEURITE OUT GROWTH | Genes involved in NCAM signaling for neurite out-growth |
0.0 | 1.9 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 1.5 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.1 | 1.4 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 1.3 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 1.3 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.1 | 1.2 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 1.0 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |