avrg: GSE58827: Dynamics of the Mouse Liver
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSMUSG00000053129.5 | GS homeobox 1 | |
ENSMUSG00000036602.7 | ALX homeobox 1 | |
ENSMUSG00000026497.7 | Mix1 homeobox-like 1 (Xenopus laevis) | |
ENSMUSG00000034968.2 | ladybird homeobox 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Lbx2 | mm10_v2_chr6_+_83086365_83086365 | -0.64 | 3.0e-05 | Click! |
Alx1 | mm10_v2_chr10_-_103029043_103029054 | -0.45 | 5.3e-03 | Click! |
Mixl1 | mm10_v2_chr1_-_180697034_180697034 | 0.05 | 7.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_138079916 Show fit | 5.75 |
ENSMUST00000171804.1
|
solute carrier family 15, member 5 |
|
chr10_-_92375367 Show fit | 4.07 |
ENSMUST00000182870.1
|
predicted gene, 20757 |
|
chr5_+_95956916 Show fit | 3.85 |
ENSMUST00000023840.5
|
chemokine (C-X-C motif) ligand 13 |
|
chr11_-_113710017 Show fit | 3.15 |
ENSMUST00000018871.1
|
cleavage and polyadenylation specific factor 4-like |
|
chr10_-_24101951 Show fit | 2.72 |
ENSMUST00000170267.1
|
trace amine-associated receptor 8C |
|
chr13_-_23574196 Show fit | 2.63 |
ENSMUST00000105106.1
|
histone cluster 1, H2bf |
|
chr7_+_103550368 Show fit | 2.63 |
ENSMUST00000106888.1
|
olfactory receptor 613 |
|
chrX_-_143933089 Show fit | 2.55 |
ENSMUST00000087313.3
|
doublecortin |
|
chr14_-_68533689 Show fit | 2.10 |
ENSMUST00000022640.7
|
a disintegrin and metallopeptidase domain 7 |
|
chr5_-_62766153 Show fit | 1.99 |
ENSMUST00000076623.4
|
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.9 | GO:0007608 | sensory perception of smell(GO:0007608) |
0.2 | 4.0 | GO:0048672 | positive regulation of collateral sprouting(GO:0048672) |
1.0 | 3.9 | GO:0033634 | positive regulation of cell-cell adhesion mediated by integrin(GO:0033634) negative regulation of endothelial cell chemotaxis(GO:2001027) |
0.0 | 3.6 | GO:0015833 | peptide transport(GO:0015833) |
0.3 | 3.2 | GO:0098789 | pre-mRNA cleavage required for polyadenylation(GO:0098789) |
0.4 | 3.1 | GO:0033353 | S-adenosylmethionine cycle(GO:0033353) |
0.3 | 2.6 | GO:0016056 | rhodopsin mediated signaling pathway(GO:0016056) |
0.1 | 2.6 | GO:0002227 | innate immune response in mucosa(GO:0002227) |
0.0 | 2.4 | GO:0003298 | physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049) |
0.3 | 2.1 | GO:0046874 | quinolinate metabolic process(GO:0046874) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.3 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.0 | 1.9 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
0.2 | 1.6 | GO:0071438 | invadopodium membrane(GO:0071438) |
0.0 | 1.6 | GO:0070469 | respiratory chain(GO:0070469) |
0.4 | 1.2 | GO:0005943 | phosphatidylinositol 3-kinase complex, class IA(GO:0005943) |
0.0 | 1.2 | GO:0001533 | cornified envelope(GO:0001533) |
0.1 | 1.1 | GO:0036057 | filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057) |
0.0 | 1.1 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.1 | 0.8 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.1 | 0.8 | GO:0042622 | photoreceptor outer segment membrane(GO:0042622) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0008017 | microtubule binding(GO:0008017) |
0.0 | 5.3 | GO:0004984 | olfactory receptor activity(GO:0004984) |
1.0 | 3.9 | GO:0031735 | CCR10 chemokine receptor binding(GO:0031735) |
0.3 | 3.5 | GO:0001594 | trace-amine receptor activity(GO:0001594) |
0.4 | 3.1 | GO:0016802 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
0.0 | 2.7 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.0 | 2.7 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.0 | 2.7 | GO:0005085 | guanyl-nucleotide exchange factor activity(GO:0005085) |
0.0 | 2.6 | GO:0015293 | symporter activity(GO:0015293) |
0.0 | 2.2 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.1 | PID CXCR3 PATHWAY | CXCR3-mediated signaling events |
0.1 | 4.4 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 1.7 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 1.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 1.4 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 1.1 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 0.8 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.0 | 0.7 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 0.7 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.1 | 3.9 | REACTOME PACKAGING OF TELOMERE ENDS | Genes involved in Packaging Of Telomere Ends |
0.1 | 3.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 2.1 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.1 | 2.1 | REACTOME NEPHRIN INTERACTIONS | Genes involved in Nephrin interactions |
0.1 | 1.9 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.1 | 1.6 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.1 | 1.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.1 | 1.3 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.0 | 1.0 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |