avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hand1 | mm10_v2_chr11_-_57832679_57832818 | 0.68 | 4.6e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_75568648 Show fit | 6.90 |
ENSMUST00000134503.1
ENSMUST00000125770.1 ENSMUST00000128886.1 ENSMUST00000151212.1 |
gamma-glutamyltransferase 1 |
|
chr10_+_75568630 Show fit | 6.52 |
ENSMUST00000145928.1
|
gamma-glutamyltransferase 1 |
|
chr10_+_75568641 Show fit | 6.25 |
ENSMUST00000131565.1
|
gamma-glutamyltransferase 1 |
|
chr7_-_17056669 Show fit | 6.15 |
ENSMUST00000037762.4
|
hypoxia inducible factor 3, alpha subunit |
|
chr8_-_85365341 Show fit | 5.91 |
ENSMUST00000121972.1
|
myosin light chain kinase 3 |
|
chr8_-_85365317 Show fit | 5.80 |
ENSMUST00000034133.7
|
myosin light chain kinase 3 |
|
chr11_+_4236411 Show fit | 5.60 |
ENSMUST00000075221.2
|
oncostatin M |
|
chr7_+_18884679 Show fit | 4.64 |
ENSMUST00000032573.6
|
peptidoglycan recognition protein 1 |
|
chr17_-_26199008 Show fit | 4.59 |
ENSMUST00000142410.1
ENSMUST00000120333.1 ENSMUST00000039113.7 |
protein disulfide isomerase associated 2 |
|
chr2_-_121036750 Show fit | 4.48 |
ENSMUST00000023987.5
|
erythrocyte protein band 4.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 19.7 | GO:1901748 | leukotriene D4 metabolic process(GO:1901748) leukotriene D4 biosynthetic process(GO:1901750) |
2.0 | 11.7 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
0.8 | 8.5 | GO:0030886 | negative regulation of myeloid dendritic cell activation(GO:0030886) |
1.1 | 5.6 | GO:0038165 | oncostatin-M-mediated signaling pathway(GO:0038165) |
0.0 | 5.4 | GO:0001666 | response to hypoxia(GO:0001666) |
0.2 | 4.7 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
1.5 | 4.6 | GO:0051714 | regulation of cytolysis in other organism(GO:0051710) positive regulation of cytolysis in other organism(GO:0051714) |
0.3 | 4.4 | GO:0072378 | blood coagulation, fibrin clot formation(GO:0072378) |
0.1 | 4.1 | GO:1902175 | regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) |
0.3 | 3.9 | GO:0035898 | parathyroid hormone secretion(GO:0035898) calcium ion import across plasma membrane(GO:0098703) calcium ion import into cell(GO:1990035) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
2.1 | 8.5 | GO:0070442 | integrin alphaIIb-beta3 complex(GO:0070442) |
0.1 | 6.3 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 6.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.0 | 5.7 | GO:0015629 | actin cytoskeleton(GO:0015629) |
0.0 | 5.4 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 4.9 | GO:0043198 | dendritic shaft(GO:0043198) |
0.1 | 3.9 | GO:0030672 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
0.5 | 3.6 | GO:0030670 | phagocytic vesicle membrane(GO:0030670) |
0.1 | 3.3 | GO:0042588 | zymogen granule(GO:0042588) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 12.6 | GO:0036374 | glutathione hydrolase activity(GO:0036374) |
1.7 | 11.7 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.0 | 9.0 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.4 | 4.8 | GO:0031545 | peptidyl-proline 4-dioxygenase activity(GO:0031545) |
0.0 | 4.8 | GO:0005262 | calcium channel activity(GO:0005262) |
0.9 | 4.6 | GO:0016019 | N-acetylmuramoyl-L-alanine amidase activity(GO:0008745) peptidoglycan receptor activity(GO:0016019) |
0.0 | 4.4 | GO:0008083 | growth factor activity(GO:0008083) |
0.1 | 4.1 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.5 | 3.9 | GO:0003810 | protein-glutamine gamma-glutamyltransferase activity(GO:0003810) |
0.0 | 3.8 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.9 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 5.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 5.6 | PID IL3 PATHWAY | IL3-mediated signaling events |
0.1 | 4.7 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.1 | 4.3 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
0.1 | 3.9 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.1 | 3.9 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 3.8 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 2.9 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
0.0 | 2.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 19.7 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.0 | 7.0 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.3 | 5.9 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.1 | 5.4 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |
0.3 | 4.4 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.2 | 4.3 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.1 | 3.6 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
0.1 | 2.4 | REACTOME N GLYCAN ANTENNAE ELONGATION | Genes involved in N-Glycan antennae elongation |
0.0 | 2.2 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.2 | 2.1 | REACTOME GLYCOPROTEIN HORMONES | Genes involved in Glycoprotein hormones |