avrg: GSE58827: Dynamics of the Mouse Liver
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSMUSG00000031386.8 | host cell factor C1 | |
ENSMUSG00000040841.5 | sine oculis-related homeobox 5 | |
ENSMUSG00000025369.8 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | |
ENSMUSG00000061079.7 | zinc finger protein 143 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Six5 | mm10_v2_chr7_+_19094594_19094633 | -0.64 | 2.2e-05 | Click! |
Hcfc1 | mm10_v2_chrX_-_73966329_73966376 | -0.40 | 1.5e-02 | Click! |
Zfp143 | mm10_v2_chr7_+_110061702_110061732 | -0.33 | 5.0e-02 | Click! |
Smarcc2 | mm10_v2_chr10_+_128459236_128459248 | -0.17 | 3.2e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 40.5 | GO:0031340 | positive regulation of vesicle fusion(GO:0031340) |
3.0 | 12.1 | GO:0042851 | L-alanine metabolic process(GO:0042851) |
0.8 | 11.5 | GO:0042407 | cristae formation(GO:0042407) |
0.4 | 11.3 | GO:0015986 | energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986) |
1.1 | 10.6 | GO:0051596 | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727) |
2.5 | 10.2 | GO:2001106 | regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106) |
0.4 | 9.7 | GO:0006107 | oxaloacetate metabolic process(GO:0006107) |
0.3 | 9.6 | GO:0045722 | positive regulation of gluconeogenesis(GO:0045722) |
0.8 | 9.4 | GO:0016114 | terpenoid biosynthetic process(GO:0016114) |
0.6 | 8.9 | GO:0033211 | adiponectin-activated signaling pathway(GO:0033211) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 51.8 | GO:0005739 | mitochondrion(GO:0005739) |
0.0 | 50.6 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.0 | 31.9 | GO:0005768 | endosome(GO:0005768) |
0.3 | 16.3 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.1 | 15.0 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.2 | 12.6 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
0.0 | 12.3 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.2 | 9.0 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 8.5 | GO:0016607 | nuclear speck(GO:0016607) |
1.2 | 8.3 | GO:0005956 | protein kinase CK2 complex(GO:0005956) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 39.7 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.1 | 16.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.5 | 14.4 | GO:0008483 | transaminase activity(GO:0008483) |
0.1 | 11.3 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) |
0.4 | 10.2 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
0.5 | 10.0 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
0.3 | 9.9 | GO:0017091 | AU-rich element binding(GO:0017091) |
0.5 | 9.1 | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism(GO:0046933) |
0.9 | 9.0 | GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity(GO:0003847) |
1.5 | 8.9 | GO:0004311 | farnesyltranstransferase activity(GO:0004311) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.6 | PID PI3KCI AKT PATHWAY | Class I PI3K signaling events mediated by Akt |
0.3 | 9.5 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.2 | 7.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.1 | 5.4 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.2 | 5.0 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 3.6 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.2 | 3.4 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.1 | 3.4 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 2.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 2.2 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 12.7 | REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING | Genes involved in Formation of ATP by chemiosmotic coupling |
0.2 | 12.7 | REACTOME VIF MEDIATED DEGRADATION OF APOBEC3G | Genes involved in Vif-mediated degradation of APOBEC3G |
0.4 | 12.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.4 | 9.4 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 9.2 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |
0.5 | 8.5 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.2 | 7.8 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.2 | 7.1 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.2 | 7.0 | REACTOME FATTY ACYL COA BIOSYNTHESIS | Genes involved in Fatty Acyl-CoA Biosynthesis |
0.1 | 6.9 | REACTOME TRANS GOLGI NETWORK VESICLE BUDDING | Genes involved in trans-Golgi Network Vesicle Budding |