avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Myc | mm10_v2_chr15_+_61987410_61987491 | 0.55 | 5.3e-04 | Click! |
Mxi1 | mm10_v2_chr19_+_53310495_53310552 | 0.51 | 1.7e-03 | Click! |
Hey1 | mm10_v2_chr3_-_8667033_8667046 | 0.09 | 5.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_26199008 Show fit | 7.10 |
ENSMUST00000142410.1
ENSMUST00000120333.1 ENSMUST00000039113.7 |
protein disulfide isomerase associated 2 |
|
chr11_+_69095217 Show fit | 5.49 |
ENSMUST00000101004.2
|
period circadian clock 1 |
|
chr17_-_26201363 Show fit | 4.50 |
ENSMUST00000121959.1
|
Rho GDP dissociation inhibitor (GDI) gamma |
|
chr9_-_67832325 Show fit | 3.91 |
ENSMUST00000054500.5
|
C2 calcium-dependent domain containing 4A |
|
chr6_-_70792155 Show fit | 3.60 |
ENSMUST00000066134.5
|
ribose 5-phosphate isomerase A |
|
chr18_+_35553401 Show fit | 3.32 |
ENSMUST00000181664.1
|
small nucleolar RNA host gene 4 (non-protein coding) |
|
chr19_+_10018193 Show fit | 3.27 |
ENSMUST00000113161.2
ENSMUST00000117641.1 |
RAB3A interacting protein (rabin3)-like 1 |
|
chrX_+_8271133 Show fit | 3.25 |
ENSMUST00000127103.1
ENSMUST00000115591.1 |
solute carrier family 38, member 5 |
|
chrX_+_8271381 Show fit | 3.24 |
ENSMUST00000033512.4
|
solute carrier family 38, member 5 |
|
chr19_+_10018265 Show fit | 3.11 |
ENSMUST00000131407.1
|
RAB3A interacting protein (rabin3)-like 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 9.1 | GO:0015816 | glycine transport(GO:0015816) |
1.4 | 7.0 | GO:0097167 | circadian regulation of translation(GO:0097167) |
0.2 | 6.8 | GO:1902175 | regulation of oxidative stress-induced intrinsic apoptotic signaling pathway(GO:1902175) |
0.1 | 4.9 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
0.6 | 4.7 | GO:0051013 | microtubule severing(GO:0051013) |
0.1 | 4.3 | GO:0045780 | positive regulation of bone resorption(GO:0045780) positive regulation of bone remodeling(GO:0046852) |
0.4 | 4.1 | GO:0045719 | negative regulation of glycogen biosynthetic process(GO:0045719) |
1.3 | 3.8 | GO:0006592 | ornithine biosynthetic process(GO:0006592) |
0.7 | 3.7 | GO:0090521 | glomerular visceral epithelial cell migration(GO:0090521) |
0.1 | 3.7 | GO:0000154 | rRNA modification(GO:0000154) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 7.8 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.6 | 4.5 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
0.1 | 4.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.1 | 3.8 | GO:0043034 | costamere(GO:0043034) |
0.8 | 3.2 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.2 | 3.1 | GO:0097512 | cardiac myofibril(GO:0097512) |
0.6 | 3.0 | GO:0044611 | nuclear pore inner ring(GO:0044611) |
0.2 | 3.0 | GO:0035686 | sperm fibrous sheath(GO:0035686) |
0.5 | 2.9 | GO:0070937 | CRD-mediated mRNA stability complex(GO:0070937) |
0.1 | 2.9 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 9.1 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.1 | 8.1 | GO:0070888 | E-box binding(GO:0070888) |
0.9 | 7.2 | GO:0005094 | Rho GDP-dissociation inhibitor activity(GO:0005094) |
0.6 | 7.0 | GO:0031545 | peptidyl-proline 4-dioxygenase activity(GO:0031545) |
0.2 | 5.7 | GO:0008187 | poly-pyrimidine tract binding(GO:0008187) |
0.1 | 5.7 | GO:0017112 | Rab guanyl-nucleotide exchange factor activity(GO:0017112) |
0.3 | 5.0 | GO:0017017 | MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017) |
0.2 | 4.7 | GO:0003746 | translation elongation factor activity(GO:0003746) |
0.1 | 4.0 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
1.3 | 3.8 | GO:0004350 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) delta1-pyrroline-5-carboxylate synthetase activity(GO:0017084) amino acid kinase activity(GO:0019202) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.4 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 7.3 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 6.7 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.3 | 5.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 4.8 | PID NOTCH PATHWAY | Notch signaling pathway |
0.1 | 3.7 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 3.7 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 3.4 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 3.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 2.9 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 14.3 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.2 | 11.2 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 9.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 5.5 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 5.2 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.1 | 4.9 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 4.5 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.1 | 4.2 | REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY | Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery |
0.1 | 4.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.1 | 3.9 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |