avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hic1 | mm10_v2_chr11_-_75169519_75169519 | -0.20 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_83337440 Show fit | 5.55 |
ENSMUST00000126617.1
|
solute carrier family 41, member 2 |
|
chr14_+_59201418 Show fit | 4.94 |
ENSMUST00000140136.2
ENSMUST00000142326.1 |
regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 |
|
chr4_-_46991842 Show fit | 4.90 |
ENSMUST00000107749.2
|
gamma-aminobutyric acid (GABA) B receptor, 2 |
|
chr8_-_84800024 Show fit | 4.70 |
ENSMUST00000126806.1
ENSMUST00000076715.6 |
nuclear factor I/X |
|
chr6_+_17463826 Show fit | 3.98 |
ENSMUST00000140070.1
|
met proto-oncogene |
|
chr10_-_83337845 Show fit | 3.87 |
ENSMUST00000039956.5
|
solute carrier family 41, member 2 |
|
chr1_+_72824482 Show fit | 3.85 |
ENSMUST00000047328.4
|
insulin-like growth factor binding protein 2 |
|
chr13_+_37826904 Show fit | 3.74 |
ENSMUST00000149745.1
|
ras responsive element binding protein 1 |
|
chr8_-_84800344 Show fit | 3.39 |
ENSMUST00000099070.3
|
nuclear factor I/X |
|
chr8_-_25038875 Show fit | 3.18 |
ENSMUST00000084031.4
|
HtrA serine peptidase 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 11.6 | GO:0051639 | actin filament network formation(GO:0051639) |
1.1 | 8.0 | GO:0070494 | regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495) |
0.4 | 7.6 | GO:0021684 | cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707) |
0.1 | 5.9 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
0.1 | 5.6 | GO:1902653 | cholesterol biosynthetic process(GO:0006695) secondary alcohol biosynthetic process(GO:1902653) |
0.1 | 5.0 | GO:1903955 | positive regulation of protein targeting to mitochondrion(GO:1903955) |
0.8 | 4.8 | GO:0006663 | platelet activating factor biosynthetic process(GO:0006663) |
0.1 | 4.8 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
0.1 | 4.8 | GO:0010508 | positive regulation of autophagy(GO:0010508) |
1.2 | 4.6 | GO:1903760 | regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization(GO:1903760) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.8 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.0 | 8.8 | GO:0030133 | transport vesicle(GO:0030133) |
0.1 | 6.1 | GO:0001725 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.1 | 5.9 | GO:0005776 | autophagosome(GO:0005776) |
0.3 | 5.5 | GO:0070852 | cell body fiber(GO:0070852) |
0.3 | 5.5 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 5.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
1.0 | 4.9 | GO:0038039 | G-protein coupled receptor heterodimeric complex(GO:0038039) |
0.7 | 4.6 | GO:0097025 | MPP7-DLG1-LIN7 complex(GO:0097025) |
0.1 | 4.3 | GO:0055038 | recycling endosome membrane(GO:0055038) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.5 | GO:0003785 | actin monomer binding(GO:0003785) |
2.0 | 8.0 | GO:0005008 | hepatocyte growth factor-activated receptor activity(GO:0005008) |
0.1 | 7.9 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 6.6 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
0.3 | 6.0 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.2 | 5.4 | GO:0005520 | insulin-like growth factor binding(GO:0005520) |
0.3 | 5.3 | GO:0003841 | 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) |
0.8 | 4.9 | GO:0004965 | G-protein coupled GABA receptor activity(GO:0004965) |
0.1 | 4.9 | GO:0030506 | ankyrin binding(GO:0030506) |
1.0 | 4.8 | GO:0004142 | diacylglycerol cholinephosphotransferase activity(GO:0004142) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 12.1 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 7.9 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 5.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 5.7 | PID CDC42 PATHWAY | CDC42 signaling events |
0.1 | 4.9 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.1 | 4.8 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.1 | 4.6 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 4.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 4.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 3.7 | PID PS1 PATHWAY | Presenilin action in Notch and Wnt signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 11.2 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.3 | 10.3 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.3 | 8.8 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.2 | 7.8 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |
0.2 | 7.1 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.1 | 5.6 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.3 | 5.5 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
0.2 | 5.3 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.1 | 4.8 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.2 | 4.0 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |