avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hif1a | mm10_v2_chr12_+_73901370_73901391 | -0.51 | 1.6e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_70314087 Show fit | 5.80 |
ENSMUST00000023393.8
|
glucan (1,4-alpha-), branching enzyme 1 |
|
chr16_+_70314119 Show fit | 5.41 |
ENSMUST00000170464.2
|
glucan (1,4-alpha-), branching enzyme 1 |
|
chr2_+_155517948 Show fit | 5.13 |
ENSMUST00000029135.8
ENSMUST00000065973.2 ENSMUST00000103142.5 |
acyl-CoA synthetase short-chain family member 2 |
|
chr16_+_70313949 Show fit | 4.90 |
ENSMUST00000163832.1
|
glucan (1,4-alpha-), branching enzyme 1 |
|
chr16_+_70314057 Show fit | 4.80 |
ENSMUST00000171132.1
|
glucan (1,4-alpha-), branching enzyme 1 |
|
chr2_+_31887262 Show fit | 3.08 |
ENSMUST00000138325.1
ENSMUST00000028187.6 |
laminin gamma 3 |
|
chr16_-_23988852 Show fit | 2.76 |
ENSMUST00000023151.5
|
B cell leukemia/lymphoma 6 |
|
chr13_-_52981027 Show fit | 2.54 |
ENSMUST00000071065.7
|
nuclear factor, interleukin 3, regulated |
|
chr10_+_75893398 Show fit | 2.44 |
ENSMUST00000009236.4
|
Der1-like domain family, member 3 |
|
chr1_-_180256294 Show fit | 2.41 |
ENSMUST00000111108.3
|
presenilin 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 19.8 | GO:0005978 | glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250) |
0.9 | 6.4 | GO:2000124 | regulation of endocannabinoid signaling pathway(GO:2000124) |
0.1 | 5.2 | GO:0006687 | glycosphingolipid metabolic process(GO:0006687) |
0.9 | 5.1 | GO:0006083 | acetate metabolic process(GO:0006083) short-chain fatty acid biosynthetic process(GO:0051790) |
1.5 | 4.4 | GO:1904274 | tricellular tight junction assembly(GO:1904274) |
0.1 | 3.6 | GO:0014002 | astrocyte development(GO:0014002) |
0.4 | 3.4 | GO:0090206 | negative regulation of cholesterol biosynthetic process(GO:0045541) negative regulation of cholesterol metabolic process(GO:0090206) |
0.7 | 2.8 | GO:0048294 | regulation of memory T cell differentiation(GO:0043380) negative regulation of isotype switching to IgE isotypes(GO:0048294) |
0.3 | 2.8 | GO:0032020 | ISG15-protein conjugation(GO:0032020) |
0.1 | 2.7 | GO:0071353 | cellular response to interleukin-4(GO:0071353) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.8 | GO:0005667 | transcription factor complex(GO:0005667) |
0.3 | 6.4 | GO:0043196 | varicosity(GO:0043196) |
0.5 | 4.4 | GO:0061689 | tricellular tight junction(GO:0061689) |
0.0 | 3.3 | GO:0044291 | cell-cell contact zone(GO:0044291) |
0.4 | 3.0 | GO:0005785 | signal recognition particle receptor complex(GO:0005785) |
0.0 | 2.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 2.4 | GO:0035253 | ciliary rootlet(GO:0035253) |
0.0 | 2.3 | GO:0042645 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
0.1 | 2.1 | GO:0031307 | integral component of mitochondrial outer membrane(GO:0031307) |
0.3 | 2.0 | GO:0097452 | GAIT complex(GO:0097452) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.2 | 20.9 | GO:0003844 | 1,4-alpha-glucan branching enzyme activity(GO:0003844) |
0.0 | 6.7 | GO:0001046 | core promoter sequence-specific DNA binding(GO:0001046) |
0.4 | 6.4 | GO:0047372 | acylglycerol lipase activity(GO:0047372) |
1.7 | 5.1 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
0.2 | 4.4 | GO:0030169 | low-density lipoprotein particle binding(GO:0030169) |
0.1 | 4.3 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 3.1 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.5 | 2.8 | GO:0042296 | ISG15 transferase activity(GO:0042296) |
0.2 | 2.8 | GO:0001161 | intronic transcription regulatory region sequence-specific DNA binding(GO:0001161) |
0.3 | 2.4 | GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving(GO:0042500) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.2 | 5.2 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 4.4 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 3.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 3.1 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 3.0 | PID LKB1 PATHWAY | LKB1 signaling events |
0.0 | 3.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 2.8 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 1.9 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.0 | 1.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 25.0 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
0.3 | 6.4 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
0.9 | 5.1 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.2 | 3.1 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.2 | 2.6 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.2 | 2.4 | REACTOME REGULATED PROTEOLYSIS OF P75NTR | Genes involved in Regulated proteolysis of p75NTR |
0.1 | 1.9 | REACTOME AMINE LIGAND BINDING RECEPTORS | Genes involved in Amine ligand-binding receptors |
0.1 | 1.7 | REACTOME CALNEXIN CALRETICULIN CYCLE | Genes involved in Calnexin/calreticulin cycle |
0.1 | 1.5 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 1.4 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |