avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hnf4a | mm10_v2_chr2_+_163547148_163547188 | 0.53 | 8.8e-04 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
11.9 | 391.3 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
9.6 | 248.7 | GO:0035634 | response to stilbenoid(GO:0035634) |
4.2 | 155.1 | GO:0019369 | arachidonic acid metabolic process(GO:0019369) |
9.7 | 135.1 | GO:0015747 | urate transport(GO:0015747) |
19.3 | 77.4 | GO:0071718 | sodium-independent icosanoid transport(GO:0071718) |
9.6 | 57.8 | GO:0008355 | olfactory learning(GO:0008355) |
18.6 | 55.9 | GO:0042450 | arginine biosynthetic process via ornithine(GO:0042450) |
1.4 | 50.1 | GO:0050892 | intestinal absorption(GO:0050892) |
12.4 | 49.6 | GO:1903966 | monounsaturated fatty acid metabolic process(GO:1903964) monounsaturated fatty acid biosynthetic process(GO:1903966) |
3.1 | 49.5 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 465.8 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.1 | 199.6 | GO:0005739 | mitochondrion(GO:0005739) |
1.4 | 123.8 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.5 | 70.5 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.3 | 61.1 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.6 | 54.1 | GO:0005811 | lipid particle(GO:0005811) |
3.3 | 50.1 | GO:0045179 | apical cortex(GO:0045179) |
0.3 | 47.5 | GO:0072562 | blood microparticle(GO:0072562) |
3.9 | 43.3 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.0 | 37.9 | GO:0031226 | intrinsic component of plasma membrane(GO:0031226) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
32.2 | 193.1 | GO:0034875 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
5.6 | 162.0 | GO:0015347 | sodium-independent organic anion transmembrane transporter activity(GO:0015347) |
9.0 | 135.1 | GO:0015143 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
3.5 | 132.2 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
30.0 | 119.9 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
39.4 | 118.3 | GO:0005186 | pheromone activity(GO:0005186) |
4.9 | 117.1 | GO:0070330 | aromatase activity(GO:0070330) |
20.3 | 81.4 | GO:0047961 | glycine N-acyltransferase activity(GO:0047961) |
3.3 | 78.6 | GO:0005550 | pheromone binding(GO:0005550) |
0.4 | 77.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 62.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
1.0 | 29.7 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.2 | 25.1 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.6 | 21.6 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.2 | 10.5 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 9.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.3 | 9.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.5 | 8.6 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.5 | 8.6 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.5 | 6.1 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.1 | 99.3 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.4 | 80.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
7.0 | 77.4 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
4.6 | 77.4 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
2.0 | 51.9 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
0.5 | 48.7 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
6.0 | 48.0 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
2.9 | 41.2 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
4.0 | 40.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
2.8 | 35.9 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |