avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hnf4g | mm10_v2_chr3_+_3634145_3634161 | -0.51 | 1.7e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_39287074 Show fit | 28.10 |
ENSMUST00000003137.8
|
cytochrome P450, family 2, subfamily c, polypeptide 29 |
|
chr17_-_46438471 Show fit | 24.97 |
ENSMUST00000087012.5
|
solute carrier family 22 (organic anion transporter), member 7 |
|
chr19_+_39007019 Show fit | 17.73 |
ENSMUST00000025966.4
|
cytochrome P450, family 2, subfamily c, polypeptide 55 |
|
chr5_+_146079254 Show fit | 17.18 |
ENSMUST00000035571.8
|
cytochrome P450, family 3, subfamily a, polypeptide 59 |
|
chr5_-_87337165 Show fit | 17.00 |
ENSMUST00000031195.2
|
UDP glucuronosyltransferase 2 family, polypeptide A3 |
|
chr16_-_18089022 Show fit | 16.89 |
ENSMUST00000132241.1
ENSMUST00000139861.1 ENSMUST00000003620.5 |
proline dehydrogenase |
|
chr9_-_46235631 Show fit | 16.84 |
ENSMUST00000118649.1
|
apolipoprotein C-III |
|
chr9_-_46235260 Show fit | 14.81 |
ENSMUST00000121916.1
ENSMUST00000034586.2 |
apolipoprotein C-III |
|
chr15_-_82764176 Show fit | 14.37 |
ENSMUST00000055721.4
|
cytochrome P450, family 2, subfamily d, polypeptide 40 |
|
chr17_-_32917048 Show fit | 13.37 |
ENSMUST00000054174.7
|
cytochrome P450, family 4, subfamily f, polypeptide 14 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.9 | 95.9 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
2.4 | 61.8 | GO:0035634 | response to stilbenoid(GO:0035634) |
1.4 | 51.1 | GO:0019369 | arachidonic acid metabolic process(GO:0019369) |
7.9 | 31.7 | GO:0071718 | sodium-independent icosanoid transport(GO:0071718) |
7.9 | 31.6 | GO:0010982 | regulation of high-density lipoprotein particle clearance(GO:0010982) |
1.6 | 26.9 | GO:0052695 | cellular glucuronidation(GO:0052695) |
1.7 | 26.8 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
4.2 | 21.0 | GO:0051594 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
1.5 | 20.6 | GO:0015747 | urate transport(GO:0015747) |
5.6 | 16.9 | GO:0010133 | proline catabolic process to glutamate(GO:0010133) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 250.5 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
0.4 | 74.3 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.2 | 68.7 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 58.1 | GO:0005739 | mitochondrion(GO:0005739) |
0.6 | 48.3 | GO:0009925 | basal plasma membrane(GO:0009925) |
1.2 | 33.5 | GO:0031907 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
2.7 | 30.2 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
2.4 | 26.0 | GO:0042627 | chylomicron(GO:0042627) |
0.1 | 24.2 | GO:0005759 | mitochondrial matrix(GO:0005759) |
1.4 | 22.8 | GO:0045180 | basal cortex(GO:0045180) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 57.1 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
8.7 | 52.3 | GO:0034875 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
2.1 | 46.7 | GO:0070330 | aromatase activity(GO:0070330) |
2.2 | 45.8 | GO:0015125 | bile acid transmembrane transporter activity(GO:0015125) |
0.3 | 34.2 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
8.4 | 33.5 | GO:0070653 | high-density lipoprotein particle receptor binding(GO:0070653) |
2.1 | 32.2 | GO:0015245 | fatty acid transporter activity(GO:0015245) |
0.7 | 27.9 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.2 | 27.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.1 | 27.1 | GO:0005452 | inorganic anion exchanger activity(GO:0005452) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 32.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 19.4 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.2 | 12.9 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.4 | 12.5 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.2 | 12.2 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.1 | 11.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 10.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.3 | 8.8 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.2 | 8.0 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.1 | 7.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 49.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
1.6 | 41.8 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
1.2 | 37.8 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.9 | 35.9 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
2.1 | 30.0 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
2.0 | 28.6 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
2.1 | 26.8 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.3 | 23.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.6 | 23.2 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
2.1 | 22.9 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |