avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hoxa6 | mm10_v2_chr6_-_52208694_52208722 | -0.49 | 2.6e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_138079916 Show fit | 7.88 |
ENSMUST00000171804.1
|
solute carrier family 15, member 5 |
|
chr2_+_70474923 Show fit | 7.16 |
ENSMUST00000100043.2
|
trans-acting transcription factor 5 |
|
chr16_+_42907563 Show fit | 6.89 |
ENSMUST00000151244.1
ENSMUST00000114694.2 |
zinc finger and BTB domain containing 20 |
|
chr14_-_118052235 Show fit | 6.45 |
ENSMUST00000022725.2
|
dopachrome tautomerase |
|
chr1_-_150466165 Show fit | 5.96 |
ENSMUST00000162367.1
ENSMUST00000161611.1 ENSMUST00000161320.1 ENSMUST00000159035.1 |
proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) |
|
chr8_-_5105232 Show fit | 5.85 |
ENSMUST00000023835.1
|
solute carrier family 10, member 2 |
|
chr2_-_148038270 Show fit | 4.86 |
ENSMUST00000132070.1
|
RIKEN cDNA 9030622O22 gene |
|
chr2_-_18048784 Show fit | 4.21 |
ENSMUST00000142856.1
|
SKI/DACH domain containing 1 |
|
chr10_+_87859255 Show fit | 4.07 |
ENSMUST00000105300.2
|
insulin-like growth factor 1 |
|
chr19_+_26749726 Show fit | 4.07 |
ENSMUST00000175842.1
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 21.9 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
1.2 | 11.0 | GO:0035887 | aortic smooth muscle cell differentiation(GO:0035887) |
0.6 | 9.4 | GO:0060501 | positive regulation of epithelial cell proliferation involved in lung morphogenesis(GO:0060501) |
1.3 | 7.5 | GO:1904075 | regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075) |
0.6 | 7.2 | GO:1900383 | regulation of synaptic plasticity by receptor localization to synapse(GO:1900383) |
0.3 | 7.2 | GO:0036342 | post-anal tail morphogenesis(GO:0036342) |
0.2 | 6.7 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
2.1 | 6.4 | GO:0006583 | melanin biosynthetic process from tyrosine(GO:0006583) |
0.7 | 6.0 | GO:0045409 | negative regulation of interleukin-6 biosynthetic process(GO:0045409) |
0.1 | 4.9 | GO:0022904 | respiratory electron transport chain(GO:0022904) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 11.0 | GO:0071564 | npBAF complex(GO:0071564) |
0.8 | 7.5 | GO:0042567 | alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567) |
0.1 | 7.5 | GO:0005902 | microvillus(GO:0005902) |
0.3 | 6.7 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.2 | 6.4 | GO:0042470 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.0 | 6.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.0 | 2.7 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 2.7 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 2.6 | GO:0070469 | respiratory chain(GO:0070469) |
0.2 | 2.4 | GO:0043083 | synaptic cleft(GO:0043083) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 24.3 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.2 | 11.4 | GO:0001105 | RNA polymerase II transcription coactivator activity(GO:0001105) |
0.3 | 8.9 | GO:0016676 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.2 | 7.5 | GO:0005159 | insulin-like growth factor receptor binding(GO:0005159) protein serine/threonine kinase activator activity(GO:0043539) |
0.0 | 7.2 | GO:0015293 | symporter activity(GO:0015293) |
0.3 | 6.4 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
0.2 | 6.0 | GO:0001871 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
0.8 | 5.8 | GO:0008508 | bile acid:sodium symporter activity(GO:0008508) |
0.1 | 4.4 | GO:0046875 | ephrin receptor binding(GO:0046875) |
0.4 | 3.0 | GO:0004013 | adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.1 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 7.5 | PID IGF1 PATHWAY | IGF1 pathway |
0.1 | 5.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 3.3 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 2.4 | PID REELIN PATHWAY | Reelin signaling pathway |
0.0 | 2.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 1.9 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.9 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 1.6 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 1.5 | PID NECTIN PATHWAY | Nectin adhesion pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 7.3 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 3.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 2.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.4 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII | Genes involved in CREB phosphorylation through the activation of CaMKII |
0.1 | 2.2 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 2.1 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 2.1 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.7 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |
0.1 | 1.6 | REACTOME ACYL CHAIN REMODELLING OF PG | Genes involved in Acyl chain remodelling of PG |
0.0 | 1.6 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |