avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hoxd12 | mm10_v2_chr2_+_74674929_74675032 | -0.34 | 4.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_5105232 Show fit | 4.92 |
ENSMUST00000023835.1
|
solute carrier family 10, member 2 |
|
chr19_+_40089688 Show fit | 3.80 |
ENSMUST00000068094.6
ENSMUST00000080171.2 |
cytochrome P450, family 2, subfamily c, polypeptide 50 |
|
chr3_+_138415484 Show fit | 3.76 |
ENSMUST00000161312.1
ENSMUST00000013458.8 |
alcohol dehydrogenase 4 (class II), pi polypeptide |
|
chr6_+_71199827 Show fit | 2.99 |
ENSMUST00000067492.7
|
fatty acid binding protein 1, liver |
|
chr10_-_92375367 Show fit | 2.73 |
ENSMUST00000182870.1
|
predicted gene, 20757 |
|
chr1_+_74713551 Show fit | 2.67 |
ENSMUST00000027356.5
|
cytochrome P450, family 27, subfamily a, polypeptide 1 |
|
chr14_-_118052235 Show fit | 2.62 |
ENSMUST00000022725.2
|
dopachrome tautomerase |
|
chr11_-_113710017 Show fit | 2.46 |
ENSMUST00000018871.1
|
cleavage and polyadenylation specific factor 4-like |
|
chr19_+_24875679 Show fit | 2.34 |
ENSMUST00000073080.5
|
predicted gene 10053 |
|
chr3_+_138374121 Show fit | 2.32 |
ENSMUST00000171054.1
|
alcohol dehydrogenase 6 (class V), pseudogene 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 5.9 | GO:0048387 | negative regulation of retinoic acid receptor signaling pathway(GO:0048387) |
0.2 | 4.9 | GO:0015721 | bile acid and bile salt transport(GO:0015721) |
0.9 | 3.8 | GO:0006069 | ethanol oxidation(GO:0006069) |
0.3 | 3.8 | GO:0043651 | linoleic acid metabolic process(GO:0043651) |
0.2 | 3.1 | GO:0048672 | positive regulation of collateral sprouting(GO:0048672) |
0.2 | 3.0 | GO:0032000 | positive regulation of fatty acid beta-oxidation(GO:0032000) |
0.0 | 2.7 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
0.9 | 2.6 | GO:0006583 | melanin biosynthetic process from tyrosine(GO:0006583) |
0.2 | 2.5 | GO:0098789 | pre-mRNA cleavage required for polyadenylation(GO:0098789) |
0.1 | 1.8 | GO:0030828 | positive regulation of cGMP biosynthetic process(GO:0030828) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | GO:0000502 | proteasome complex(GO:0000502) |
0.2 | 3.0 | GO:0045179 | apical cortex(GO:0045179) |
0.1 | 2.6 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.1 | 2.5 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.1 | 1.5 | GO:0036056 | filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057) |
0.1 | 1.5 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
0.0 | 1.5 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.1 | 1.4 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
0.0 | 1.0 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
0.1 | 0.8 | GO:0042613 | MHC class II protein complex(GO:0042613) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 5.4 | GO:0052650 | NADP-retinol dehydrogenase activity(GO:0052650) |
0.7 | 4.9 | GO:0008508 | bile acid:sodium symporter activity(GO:0008508) |
1.3 | 3.8 | GO:0004024 | NADPH:quinone reductase activity(GO:0003960) alcohol dehydrogenase activity, zinc-dependent(GO:0004024) |
0.9 | 3.8 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
0.0 | 3.4 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.0 | 3.2 | GO:0008017 | microtubule binding(GO:0008017) |
0.4 | 3.0 | GO:0005324 | long-chain fatty acid transporter activity(GO:0005324) |
0.0 | 2.7 | GO:0008395 | steroid hydroxylase activity(GO:0008395) |
0.1 | 2.6 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
0.0 | 2.5 | GO:0004521 | endoribonuclease activity(GO:0004521) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.0 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 3.1 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 2.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 1.9 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.0 | 1.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.6 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.0 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 1.0 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 0.8 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.0 | 0.7 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 4.9 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 4.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.6 | 3.8 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.2 | 2.7 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 2.5 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.0 | 1.5 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 1.3 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.0 | 1.1 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 1.0 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.0 | 1.0 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |