avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Irf3 | mm10_v2_chr7_+_44997648_44997700 | 0.42 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_77411034 Show fit | 10.88 |
ENSMUST00000089452.5
ENSMUST00000081776.3 |
apolipoprotein L 9a |
|
chr15_+_77729091 Show fit | 10.51 |
ENSMUST00000109775.2
|
apolipoprotein L 9b |
|
chr5_-_120812484 Show fit | 5.30 |
ENSMUST00000125547.1
|
2'-5' oligoadenylate synthetase 1C |
|
chr11_-_49064202 Show fit | 4.95 |
ENSMUST00000046745.6
|
T cell specific GTPase 2 |
|
chr2_-_173218879 Show fit | 4.58 |
ENSMUST00000109116.2
ENSMUST00000029018.7 |
Z-DNA binding protein 1 |
|
chr11_-_48992226 Show fit | 4.37 |
ENSMUST00000059930.2
ENSMUST00000068063.3 |
predicted gene 12185 T cell specific GTPase 1 |
|
chr5_-_120812506 Show fit | 4.10 |
ENSMUST00000117193.1
ENSMUST00000130045.1 |
2'-5' oligoadenylate synthetase 1C |
|
chr8_-_71537402 Show fit | 3.83 |
ENSMUST00000051672.7
|
bone marrow stromal cell antigen 2 |
|
chr19_+_34583528 Show fit | 3.67 |
ENSMUST00000102825.3
|
interferon-induced protein with tetratricopeptide repeats 3 |
|
chr3_+_142560052 Show fit | 3.61 |
ENSMUST00000106222.2
|
guanylate binding protein 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 33.0 | GO:0035456 | response to interferon-beta(GO:0035456) |
0.9 | 4.7 | GO:0046967 | cytosol to ER transport(GO:0046967) |
0.5 | 4.6 | GO:0060340 | positive regulation of type I interferon-mediated signaling pathway(GO:0060340) |
1.0 | 4.0 | GO:0061762 | CAMKK-AMPK signaling cascade(GO:0061762) |
0.9 | 2.6 | GO:1900245 | positive regulation of MDA-5 signaling pathway(GO:1900245) |
0.8 | 2.4 | GO:0034124 | regulation of MyD88-dependent toll-like receptor signaling pathway(GO:0034124) |
0.1 | 2.4 | GO:0044406 | adhesion of symbiont to host(GO:0044406) |
1.2 | 2.3 | GO:0002477 | antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481) |
0.6 | 2.3 | GO:0070212 | protein poly-ADP-ribosylation(GO:0070212) |
0.3 | 2.3 | GO:1990504 | dense core granule exocytosis(GO:1990504) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 16.7 | GO:0020003 | symbiont-containing vacuole(GO:0020003) |
0.0 | 10.5 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.6 | 4.7 | GO:0042825 | TAP complex(GO:0042825) |
0.3 | 3.9 | GO:0044754 | autolysosome(GO:0044754) |
0.0 | 3.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.3 | 3.4 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
0.0 | 2.3 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.3 | 2.0 | GO:0071458 | integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) |
0.3 | 1.7 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.0 | 1.2 | GO:0005643 | nuclear pore(GO:0005643) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.4 | GO:0003924 | GTPase activity(GO:0003924) |
1.3 | 14.1 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.2 | 4.8 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.9 | 4.7 | GO:0046980 | peptide antigen-transporting ATPase activity(GO:0015433) tapasin binding(GO:0046980) |
1.5 | 4.6 | GO:0003692 | left-handed Z-DNA binding(GO:0003692) |
0.4 | 4.0 | GO:0051434 | BH3 domain binding(GO:0051434) |
0.3 | 3.8 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.2 | 2.0 | GO:0042500 | aspartic endopeptidase activity, intramembrane cleaving(GO:0042500) |
0.5 | 1.9 | GO:0031849 | olfactory receptor binding(GO:0031849) |
0.1 | 1.7 | GO:0070628 | proteasome binding(GO:0070628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 4.7 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 2.4 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.0 | 2.4 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 2.3 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 1.4 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 1.3 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
0.0 | 1.3 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.0 | 0.7 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 0.5 | PID IL27 PATHWAY | IL27-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 5.6 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.2 | 4.6 | REACTOME RIP MEDIATED NFKB ACTIVATION VIA DAI | Genes involved in RIP-mediated NFkB activation via DAI |
0.2 | 4.2 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 3.6 | REACTOME RIG I MDA5 MEDIATED INDUCTION OF IFN ALPHA BETA PATHWAYS | Genes involved in RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways |
0.0 | 2.6 | REACTOME CDK MEDIATED PHOSPHORYLATION AND REMOVAL OF CDC6 | Genes involved in CDK-mediated phosphorylation and removal of Cdc6 |
0.1 | 2.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.8 | 2.3 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.0 | 1.6 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.1 | 1.4 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |
0.0 | 1.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |