avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Irx2 | mm10_v2_chr13_+_72628802_72628825 | -0.45 | 5.9e-03 | Click! |
Irx6 | mm10_v2_chr8_+_92674826_92674826 | -0.42 | 1.2e-02 | Click! |
Irx3 | mm10_v2_chr8_-_91801948_91802067 | -0.16 | 3.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_67433181 Show fit | 2.45 |
ENSMUST00000180773.1
|
predicted gene, 26727 |
|
chr6_-_130386874 Show fit | 2.16 |
ENSMUST00000032288.4
|
killer cell lectin-like receptor, subfamily A, member 1 |
|
chr2_-_169587745 Show fit | 1.83 |
ENSMUST00000109160.2
|
predicted gene 11011 |
|
chr19_+_20601958 Show fit | 1.41 |
ENSMUST00000087638.3
|
aldehyde dehydrogenase family 1, subfamily A1 |
|
chr12_-_74316394 Show fit | 1.35 |
ENSMUST00000110441.1
|
predicted gene 11042 |
|
chr4_-_60499332 Show fit | 1.00 |
ENSMUST00000135953.1
|
major urinary protein 1 |
|
chr2_-_169405435 Show fit | 0.85 |
ENSMUST00000131509.1
|
RIKEN cDNA 4930529I22 gene |
|
chr14_-_30353468 Show fit | 0.85 |
ENSMUST00000112249.1
|
calcium channel, voltage-dependent, L type, alpha 1D subunit |
|
chr18_-_31820413 Show fit | 0.81 |
ENSMUST00000165131.2
|
predicted gene 6665 |
|
chr4_+_63344548 Show fit | 0.78 |
ENSMUST00000030044.2
|
orosomucoid 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
0.2 | 1.5 | GO:0042905 | 9-cis-retinoic acid biosynthetic process(GO:0042904) 9-cis-retinoic acid metabolic process(GO:0042905) |
0.1 | 1.5 | GO:0052695 | cellular glucuronidation(GO:0052695) |
0.1 | 1.0 | GO:0071394 | cellular response to testosterone stimulus(GO:0071394) |
0.0 | 0.9 | GO:0080184 | response to phenylpropanoid(GO:0080184) |
0.2 | 0.8 | GO:0086046 | membrane depolarization during SA node cell action potential(GO:0086046) |
0.2 | 0.7 | GO:0032382 | positive regulation of intracellular lipid transport(GO:0032379) positive regulation of intracellular sterol transport(GO:0032382) positive regulation of intracellular cholesterol transport(GO:0032385) lipid hydroperoxide transport(GO:1901373) |
0.0 | 0.7 | GO:0046415 | urate metabolic process(GO:0046415) |
0.0 | 0.7 | GO:0019236 | response to pheromone(GO:0019236) |
0.2 | 0.6 | GO:0010133 | proline catabolic process to glutamate(GO:0010133) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0000800 | lateral element(GO:0000800) |
0.1 | 0.8 | GO:1990454 | L-type voltage-gated calcium channel complex(GO:1990454) |
0.1 | 0.7 | GO:0031315 | extrinsic component of mitochondrial outer membrane(GO:0031315) |
0.0 | 0.6 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.0 | 0.5 | GO:0005687 | U4 snRNP(GO:0005687) |
0.0 | 0.5 | GO:0005583 | fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643) |
0.0 | 0.5 | GO:0005782 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
0.1 | 0.4 | GO:0097209 | epidermal lamellar body(GO:0097209) |
0.0 | 0.4 | GO:0030061 | mitochondrial crista(GO:0030061) |
0.0 | 0.3 | GO:0005964 | phosphorylase kinase complex(GO:0005964) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.0 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.5 | 1.4 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
0.1 | 1.4 | GO:0005550 | pheromone binding(GO:0005550) |
0.0 | 1.3 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.0 | 1.1 | GO:0004129 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
0.3 | 1.0 | GO:0005186 | insulin-activated receptor activity(GO:0005009) pheromone activity(GO:0005186) |
0.2 | 1.0 | GO:0033695 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.1 | 0.9 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.1 | 0.8 | GO:0086007 | voltage-gated calcium channel activity involved in cardiac muscle cell action potential(GO:0086007) |
0.2 | 0.7 | GO:0050632 | propanoyl-CoA C-acyltransferase activity(GO:0033814) propionyl-CoA C2-trimethyltridecanoyltransferase activity(GO:0050632) phosphatidylethanolamine transporter activity(GO:1904121) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 0.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 0.2 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.4 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.1 | 1.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.1 | 1.0 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.0 | 0.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
0.2 | 0.7 | REACTOME XENOBIOTICS | Genes involved in Xenobiotics |
0.0 | 0.7 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.0 | 0.5 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.0 | 0.3 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.0 | 0.3 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |