avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nrl | mm10_v2_chr14_-_55524938_55524967 | -0.38 | 2.2e-02 | Click! |
Maf | mm10_v2_chr8_-_115706994_115707096 | -0.38 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_39007019 Show fit | 13.61 |
ENSMUST00000025966.4
|
cytochrome P450, family 2, subfamily c, polypeptide 55 |
|
chr10_+_87860030 Show fit | 13.41 |
ENSMUST00000062862.6
|
insulin-like growth factor 1 |
|
chr10_+_87859593 Show fit | 12.31 |
ENSMUST00000126490.1
|
insulin-like growth factor 1 |
|
chr10_+_87859481 Show fit | 7.64 |
ENSMUST00000121952.1
|
insulin-like growth factor 1 |
|
chr10_+_87859255 Show fit | 6.87 |
ENSMUST00000105300.2
|
insulin-like growth factor 1 |
|
chr10_+_87859062 Show fit | 6.48 |
ENSMUST00000095360.4
|
insulin-like growth factor 1 |
|
chr9_-_46235260 Show fit | 6.29 |
ENSMUST00000121916.1
ENSMUST00000034586.2 |
apolipoprotein C-III |
|
chr19_+_20601958 Show fit | 5.65 |
ENSMUST00000087638.3
|
aldehyde dehydrogenase family 1, subfamily A1 |
|
chr19_-_20727533 Show fit | 5.17 |
ENSMUST00000025656.3
|
aldehyde dehydrogenase family 1, subfamily A7 |
|
chr4_+_104766334 Show fit | 4.55 |
ENSMUST00000065072.6
|
complement component 8, beta polypeptide |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.8 | 46.7 | GO:1904073 | regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075) |
1.2 | 13.6 | GO:0043651 | linoleic acid metabolic process(GO:0043651) |
2.4 | 9.4 | GO:0010982 | regulation of high-density lipoprotein particle clearance(GO:0010982) |
0.6 | 9.0 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.5 | 6.5 | GO:0042573 | retinoic acid metabolic process(GO:0042573) |
0.0 | 6.4 | GO:0035023 | regulation of Rho protein signal transduction(GO:0035023) |
0.5 | 6.0 | GO:0018298 | protein-chromophore linkage(GO:0018298) |
0.8 | 5.6 | GO:0042905 | 9-cis-retinoic acid biosynthetic process(GO:0042904) 9-cis-retinoic acid metabolic process(GO:0042905) |
0.3 | 5.2 | GO:0006968 | cellular defense response(GO:0006968) |
0.2 | 4.6 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.2 | 46.7 | GO:0035867 | alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567) |
1.0 | 10.7 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.8 | 9.0 | GO:0005579 | membrane attack complex(GO:0005579) |
0.0 | 2.9 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.1 | 2.6 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
0.0 | 2.3 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.1 | 2.0 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
0.0 | 2.0 | GO:0005770 | late endosome(GO:0005770) |
0.1 | 1.9 | GO:0030660 | Golgi-associated vesicle membrane(GO:0030660) |
0.3 | 1.8 | GO:0097550 | transcriptional preinitiation complex(GO:0097550) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 46.7 | GO:0043539 | insulin-like growth factor receptor binding(GO:0005159) protein serine/threonine kinase activator activity(GO:0043539) |
3.4 | 13.6 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
3.6 | 10.8 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
2.7 | 10.7 | GO:0070653 | high-density lipoprotein particle receptor binding(GO:0070653) |
0.2 | 7.3 | GO:0005070 | SH3/SH2 adaptor activity(GO:0005070) |
0.0 | 6.5 | GO:0008017 | microtubule binding(GO:0008017) |
0.2 | 5.6 | GO:0005537 | mannose binding(GO:0005537) |
0.0 | 5.6 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
0.6 | 5.1 | GO:0008020 | G-protein coupled photoreceptor activity(GO:0008020) |
0.1 | 4.6 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 46.9 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 5.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 4.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 3.9 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.0 | 3.6 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.9 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 2.3 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.1 | 2.2 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 1.9 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.0 | 1.6 | PID IL1 PATHWAY | IL1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 11.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.3 | 9.0 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.9 | 5.6 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.6 | 5.1 | REACTOME OPSINS | Genes involved in Opsins |
0.2 | 4.6 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 4.1 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.1 | 3.0 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.1 | 2.6 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |
0.1 | 2.5 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
0.0 | 2.1 | REACTOME PLC BETA MEDIATED EVENTS | Genes involved in PLC beta mediated events |