avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Mbd2 | mm10_v2_chr18_+_70568189_70568398 | -0.39 | 1.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_137277489 Show fit | 1.95 |
ENSMUST00000045747.4
|
wingless-related MMTV integration site 4 |
|
chr4_-_149774238 Show fit | 1.86 |
ENSMUST00000105686.2
|
solute carrier family 25, member 33 |
|
chr5_-_135078224 Show fit | 1.79 |
ENSMUST00000067935.4
ENSMUST00000076203.2 |
vacuolar protein sorting 37D (yeast) |
|
chr5_+_30588078 Show fit | 1.57 |
ENSMUST00000066295.2
|
potassium channel, subfamily K, member 3 |
|
chr2_-_24763047 Show fit | 1.52 |
ENSMUST00000100348.3
ENSMUST00000041342.5 ENSMUST00000114447.1 ENSMUST00000102939.2 ENSMUST00000070864.7 |
calcium channel, voltage-dependent, N type, alpha 1B subunit |
|
chr17_+_83215271 Show fit | 1.51 |
ENSMUST00000170794.1
|
protein kinase domain containing, cytoplasmic |
|
chr1_+_91801453 Show fit | 1.48 |
ENSMUST00000007949.3
|
twist basic helix-loop-helix transcription factor 2 |
|
chr11_+_85832551 Show fit | 1.33 |
ENSMUST00000000095.6
|
T-box 2 |
|
chr4_-_151861762 Show fit | 1.28 |
ENSMUST00000097774.2
|
calmodulin binding transcription activator 1 |
|
chr4_-_120747248 Show fit | 1.24 |
ENSMUST00000030376.7
|
potassium voltage-gated channel, subfamily Q, member 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | GO:0055012 | ventricular cardiac muscle cell differentiation(GO:0055012) |
0.7 | 2.0 | GO:2000019 | tertiary branching involved in mammary gland duct morphogenesis(GO:0060748) positive regulation of dermatome development(GO:0061184) renal vesicle induction(GO:0072034) negative regulation of male gonad development(GO:2000019) |
0.2 | 2.0 | GO:0061303 | cornea development in camera-type eye(GO:0061303) |
0.4 | 1.9 | GO:0072531 | pyrimidine-containing compound transmembrane transport(GO:0072531) |
0.0 | 1.8 | GO:0050885 | neuromuscular process controlling balance(GO:0050885) |
0.2 | 1.7 | GO:1901250 | regulation of lung goblet cell differentiation(GO:1901249) negative regulation of lung goblet cell differentiation(GO:1901250) |
0.1 | 1.6 | GO:0030322 | stabilization of membrane potential(GO:0030322) |
0.3 | 1.5 | GO:0090005 | negative regulation of Golgi to plasma membrane protein transport(GO:0042997) negative regulation of establishment of protein localization to plasma membrane(GO:0090005) |
0.1 | 1.5 | GO:0033574 | response to testosterone(GO:0033574) |
0.4 | 1.3 | GO:0007521 | muscle cell fate determination(GO:0007521) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 1.9 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.2 | 1.8 | GO:0000813 | ESCRT I complex(GO:0000813) |
0.0 | 1.5 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) |
0.0 | 1.5 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.1 | 1.3 | GO:0071565 | nBAF complex(GO:0071565) |
0.1 | 1.2 | GO:0000124 | SAGA complex(GO:0000124) |
0.0 | 1.2 | GO:0031201 | SNARE complex(GO:0031201) |
0.0 | 1.0 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.0 | 1.0 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.5 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.0 | 3.9 | GO:0001077 | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001077) |
0.3 | 2.3 | GO:0030375 | thyroid hormone receptor coactivator activity(GO:0030375) |
0.1 | 2.1 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.1 | 1.9 | GO:0015215 | nucleotide transmembrane transporter activity(GO:0015215) |
0.0 | 1.7 | GO:0001540 | beta-amyloid binding(GO:0001540) |
0.1 | 1.6 | GO:0022841 | potassium ion leak channel activity(GO:0022841) S100 protein binding(GO:0044548) |
0.1 | 1.5 | GO:0050321 | tau-protein kinase activity(GO:0050321) |
0.0 | 1.3 | GO:0008157 | protein phosphatase 1 binding(GO:0008157) |
0.0 | 1.3 | GO:0030145 | manganese ion binding(GO:0030145) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 2.6 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
0.0 | 2.3 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.4 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 1.2 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
0.0 | 1.2 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 1.0 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.8 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.8 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 0.7 | PID P53 REGULATION PATHWAY | p53 pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 2.3 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.2 | 1.8 | REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS | Genes involved in Membrane binding and targetting of GAG proteins |
0.1 | 1.6 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.0 | 1.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.3 | REACTOME ADENYLATE CYCLASE INHIBITORY PATHWAY | Genes involved in Adenylate cyclase inhibitory pathway |
0.0 | 1.1 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 1.0 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |
0.0 | 1.0 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 0.9 | REACTOME DOWNREGULATION OF TGF BETA RECEPTOR SIGNALING | Genes involved in Downregulation of TGF-beta receptor signaling |