avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Lmx1a | mm10_v2_chr1_+_167689552_167689563 | 0.24 | 1.6e-01 | Click! |
Mnx1 | mm10_v2_chr5_-_29478470_29478597 | 0.24 | 1.7e-01 | Click! |
Lhx6 | mm10_v2_chr2_-_36104060_36104073 | 0.10 | 5.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_27000362 Show fit | 5.73 |
ENSMUST00000035433.8
|
homeobox gene expressed in ES cells |
|
chr4_+_34893772 Show fit | 5.25 |
ENSMUST00000029975.3
ENSMUST00000135871.1 ENSMUST00000108130.1 |
glycoprotein hormones, alpha subunit |
|
chr2_+_25372315 Show fit | 3.64 |
ENSMUST00000028329.6
ENSMUST00000114293.2 ENSMUST00000100323.2 |
suppressor APC domain containing 2 |
|
chr15_-_79285502 Show fit | 2.93 |
ENSMUST00000165408.1
|
BAI1-associated protein 2-like 2 |
|
chrX_-_139871637 Show fit | 2.47 |
ENSMUST00000033811.7
ENSMUST00000087401.5 |
microrchidia 4 |
|
chr9_+_65890237 Show fit | 2.30 |
ENSMUST00000045802.6
|
RIKEN cDNA 2810417H13 gene |
|
chr15_-_79285470 Show fit | 2.21 |
ENSMUST00000170955.1
|
BAI1-associated protein 2-like 2 |
|
chr6_-_30958990 Show fit | 2.21 |
ENSMUST00000101589.3
|
Kruppel-like factor 14 |
|
chr6_+_123262107 Show fit | 2.18 |
ENSMUST00000032240.2
|
C-type lectin domain family 4, member d |
|
chr15_-_34356421 Show fit | 2.17 |
ENSMUST00000179647.1
|
RIKEN cDNA 9430069I07 gene |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 5.7 | GO:0030916 | otic vesicle formation(GO:0030916) |
0.4 | 5.2 | GO:0046884 | follicle-stimulating hormone secretion(GO:0046884) |
0.2 | 5.1 | GO:2000251 | positive regulation of actin cytoskeleton reorganization(GO:2000251) |
0.2 | 4.1 | GO:0001833 | inner cell mass cell proliferation(GO:0001833) |
0.7 | 3.4 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
0.1 | 3.4 | GO:0090036 | regulation of protein kinase C signaling(GO:0090036) |
0.2 | 2.7 | GO:0071578 | zinc II ion transmembrane import(GO:0071578) |
0.9 | 2.6 | GO:1905000 | regulation of membrane repolarization during atrial cardiac muscle cell action potential(GO:1905000) |
0.0 | 2.4 | GO:0006182 | cGMP biosynthetic process(GO:0006182) |
0.4 | 2.2 | GO:0038094 | Fc-gamma receptor signaling pathway(GO:0038094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.1 | GO:0071439 | clathrin complex(GO:0071439) |
0.0 | 4.9 | GO:0000792 | heterochromatin(GO:0000792) |
0.2 | 2.7 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.5 | 2.6 | GO:0031523 | Myb complex(GO:0031523) |
0.1 | 2.4 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
0.5 | 2.1 | GO:0060187 | cell pole(GO:0060187) |
0.1 | 2.1 | GO:0031527 | filopodium membrane(GO:0031527) |
0.0 | 1.8 | GO:0030673 | axolemma(GO:0030673) |
0.0 | 1.7 | GO:0000776 | kinetochore(GO:0000776) |
0.1 | 1.4 | GO:0031618 | nuclear pericentric heterochromatin(GO:0031618) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.7 | GO:0047485 | protein N-terminus binding(GO:0047485) |
0.0 | 5.9 | GO:0005179 | hormone activity(GO:0005179) |
0.1 | 3.4 | GO:0008483 | transaminase activity(GO:0008483) |
0.1 | 2.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.5 | 2.6 | GO:0034988 | Fc-gamma receptor I complex binding(GO:0034988) |
0.3 | 2.3 | GO:0035727 | lysophosphatidic acid binding(GO:0035727) |
0.1 | 2.2 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.0 | 1.8 | GO:0098811 | transcriptional activator activity, RNA polymerase II transcription factor binding(GO:0001190) transcriptional repressor activity, RNA polymerase II activating transcription factor binding(GO:0098811) |
0.1 | 1.6 | GO:0015643 | toxic substance binding(GO:0015643) |
0.0 | 1.6 | GO:0001965 | G-protein alpha-subunit binding(GO:0001965) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 3.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 2.6 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.0 | 2.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 1.8 | PID FAK PATHWAY | Signaling events mediated by focal adhesion kinase |
0.0 | 1.6 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 1.1 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 1.0 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.9 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 5.2 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |
0.1 | 3.4 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.0 | 3.2 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 3.0 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.1 | 2.7 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 1.4 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.1 | 1.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 1.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
0.1 | 0.9 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.0 | 0.8 | REACTOME THE ROLE OF NEF IN HIV1 REPLICATION AND DISEASE PATHOGENESIS | Genes involved in The role of Nef in HIV-1 replication and disease pathogenesis |