avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Neurod1 | mm10_v2_chr2_-_79456750_79456761 | -0.33 | 4.8e-02 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 10.9 | GO:0042905 | 9-cis-retinoic acid biosynthetic process(GO:0042904) 9-cis-retinoic acid metabolic process(GO:0042905) |
0.2 | 8.2 | GO:1901522 | positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522) |
0.7 | 8.1 | GO:0005513 | detection of calcium ion(GO:0005513) |
0.6 | 7.8 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.1 | 6.9 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
2.1 | 6.2 | GO:1990535 | negative regulation of NAD(P)H oxidase activity(GO:0033861) neuron projection maintenance(GO:1990535) |
0.0 | 6.1 | GO:0006006 | glucose metabolic process(GO:0006006) |
0.8 | 5.3 | GO:0098914 | membrane repolarization during atrial cardiac muscle cell action potential(GO:0098914) |
0.9 | 4.7 | GO:0009732 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
0.2 | 4.3 | GO:0048642 | negative regulation of skeletal muscle tissue development(GO:0048642) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.9 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.4 | 9.7 | GO:0030285 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.1 | 8.9 | GO:0072562 | blood microparticle(GO:0072562) |
0.3 | 7.8 | GO:0042588 | zymogen granule(GO:0042588) |
0.2 | 6.2 | GO:0005732 | small nucleolar ribonucleoprotein complex(GO:0005732) |
0.0 | 5.5 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 5.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 5.3 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
0.3 | 4.7 | GO:0045180 | basal cortex(GO:0045180) |
0.1 | 4.7 | GO:0099501 | synaptic vesicle membrane(GO:0030672) exocytic vesicle membrane(GO:0099501) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 19.2 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
0.2 | 12.4 | GO:0005158 | insulin receptor binding(GO:0005158) |
0.8 | 8.2 | GO:0004886 | 9-cis retinoic acid receptor activity(GO:0004886) |
0.0 | 8.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
2.0 | 8.1 | GO:0030348 | syntaxin-3 binding(GO:0030348) |
2.6 | 7.8 | GO:0004771 | sterol esterase activity(GO:0004771) retinyl-palmitate esterase activity(GO:0050253) |
1.3 | 5.3 | GO:0016286 | small conductance calcium-activated potassium channel activity(GO:0016286) |
0.2 | 5.3 | GO:0019825 | oxygen binding(GO:0019825) |
0.4 | 4.7 | GO:0004340 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) |
0.1 | 4.4 | GO:0030332 | cyclin binding(GO:0030332) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 8.2 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 7.6 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.1 | 7.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 4.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 4.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 4.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 3.0 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 2.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 1.6 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.8 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.7 | 8.1 | REACTOME ACETYLCHOLINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Acetylcholine Neurotransmitter Release Cycle |
0.2 | 7.4 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 6.7 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.1 | 3.9 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.2 | 3.7 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.1 | 3.4 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.1 | 3.1 | REACTOME INTRINSIC PATHWAY | Genes involved in Intrinsic Pathway |
0.1 | 3.0 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.1 | 2.7 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |