avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nfib | mm10_v2_chr4_-_82705735_82705754 | 0.34 | 4.3e-02 | Click! |
Nfic | mm10_v2_chr10_-_81427114_81427187 | 0.33 | 4.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_130369420 Show fit | 6.63 |
ENSMUST00000086029.3
|
calneuron 1 |
|
chr5_-_145805862 Show fit | 6.16 |
ENSMUST00000067479.5
|
cytochrome P450, family 3, subfamily a, polypeptide 44 |
|
chr3_-_107221722 Show fit | 5.54 |
ENSMUST00000029504.8
|
chymosin |
|
chr6_+_78425973 Show fit | 4.58 |
ENSMUST00000079926.5
|
regenerating islet-derived 1 |
|
chr7_+_119526269 Show fit | 3.98 |
ENSMUST00000066465.1
|
acyl-CoA synthetase medium-chain family member 5 |
|
chr9_-_109849440 Show fit | 3.78 |
ENSMUST00000112022.2
|
cathelicidin antimicrobial peptide |
|
chr11_+_115462464 Show fit | 3.57 |
ENSMUST00000106532.3
ENSMUST00000092445.5 ENSMUST00000153466.1 |
solute carrier family 16 (monocarboxylic acid transporters), member 5 |
|
chr7_-_142576492 Show fit | 3.35 |
ENSMUST00000140716.1
|
H19 fetal liver mRNA |
|
chr7_-_44524642 Show fit | 3.18 |
ENSMUST00000165208.2
|
myosin binding protein C, fast-type |
|
chr18_+_33464163 Show fit | 3.10 |
ENSMUST00000097634.3
|
predicted gene 10549 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 9.2 | GO:2000653 | regulation of genetic imprinting(GO:2000653) |
0.4 | 5.3 | GO:0061469 | regulation of type B pancreatic cell proliferation(GO:0061469) |
0.1 | 4.5 | GO:0019369 | arachidonic acid metabolic process(GO:0019369) |
0.2 | 3.8 | GO:0051873 | disruption by host of symbiont cells(GO:0051852) killing by host of symbiont cells(GO:0051873) |
0.6 | 3.2 | GO:0072138 | mesenchymal cell proliferation involved in ureteric bud development(GO:0072138) |
0.2 | 3.2 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
1.0 | 3.1 | GO:1990523 | negative regulation of SMAD protein import into nucleus(GO:0060392) endothelial cell-cell adhesion(GO:0071603) negative regulation of sensory perception of pain(GO:1904057) bone regeneration(GO:1990523) |
0.1 | 3.1 | GO:0033622 | integrin activation(GO:0033622) |
0.7 | 3.0 | GO:0010248 | establishment or maintenance of transmembrane electrochemical gradient(GO:0010248) |
1.0 | 2.9 | GO:0061402 | positive regulation of transcription from RNA polymerase II promoter in response to acidic pH(GO:0061402) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.7 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.1 | 9.6 | GO:0005844 | polysome(GO:0005844) |
0.2 | 6.6 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.2 | 5.3 | GO:0032982 | myosin filament(GO:0032982) |
0.0 | 5.0 | GO:0005581 | collagen trimer(GO:0005581) |
1.2 | 4.9 | GO:0071953 | elastic fiber(GO:0071953) |
0.2 | 4.9 | GO:0042588 | zymogen granule(GO:0042588) |
0.1 | 4.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.0 | 4.2 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.3 | 3.8 | GO:0042581 | specific granule(GO:0042581) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 10.3 | GO:0050649 | testosterone 6-beta-hydroxylase activity(GO:0050649) |
0.0 | 6.2 | GO:0008083 | growth factor activity(GO:0008083) |
1.8 | 5.5 | GO:0052870 | tocopherol omega-hydroxylase activity(GO:0052870) alpha-tocopherol omega-hydroxylase activity(GO:0052871) |
0.2 | 5.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
0.4 | 5.0 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
0.1 | 4.6 | GO:0005520 | insulin-like growth factor binding(GO:0005520) |
0.6 | 4.0 | GO:0003996 | acyl-CoA ligase activity(GO:0003996) |
0.1 | 3.8 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
0.1 | 3.5 | GO:0005452 | inorganic anion exchanger activity(GO:0005452) |
0.1 | 3.5 | GO:0005044 | scavenger receptor activity(GO:0005044) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 6.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 5.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 5.0 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 4.2 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.5 | 3.8 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
0.0 | 2.3 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 2.1 | PID BCR 5PATHWAY | BCR signaling pathway |
0.0 | 1.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 1.8 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.4 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.5 | 6.0 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.1 | 4.6 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 3.9 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.2 | 3.6 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |
0.1 | 3.6 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.3 | 3.0 | REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT | Genes involved in Organic cation/anion/zwitterion transport |
0.0 | 2.9 | REACTOME CELL DEATH SIGNALLING VIA NRAGE NRIF AND NADE | Genes involved in Cell death signalling via NRAGE, NRIF and NADE |
0.1 | 2.7 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 2.5 | REACTOME SEMA4D IN SEMAPHORIN SIGNALING | Genes involved in Sema4D in semaphorin signaling |