avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nkx2-2 | mm10_v2_chr2_-_147186389_147186413 | -0.13 | 4.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_46039202 Show fit | 7.62 |
ENSMUST00000156200.1
|
tropomodulin 1 |
|
chr10_+_88091070 Show fit | 6.76 |
ENSMUST00000048621.7
|
pro-melanin-concentrating hormone |
|
chr6_-_41704339 Show fit | 6.57 |
ENSMUST00000031899.8
|
Kell blood group |
|
chr9_+_72438519 Show fit | 5.70 |
ENSMUST00000184604.1
|
meiosis-specific nuclear structural protein 1 |
|
chr9_+_72438534 Show fit | 5.36 |
ENSMUST00000034746.8
|
meiosis-specific nuclear structural protein 1 |
|
chrX_+_9885622 Show fit | 5.04 |
ENSMUST00000067529.2
ENSMUST00000086165.3 |
synaptotagmin-like 5 |
|
chr6_+_86078070 Show fit | 4.67 |
ENSMUST00000032069.5
|
adducin 2 (beta) |
|
chr1_+_40439767 Show fit | 4.45 |
ENSMUST00000173514.1
|
interleukin 1 receptor-like 1 |
|
chr1_+_40439627 Show fit | 4.26 |
ENSMUST00000097772.3
|
interleukin 1 receptor-like 1 |
|
chr1_-_52953179 Show fit | 3.87 |
ENSMUST00000114492.1
|
RIKEN cDNA 1700019D03 gene |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 11.1 | GO:0070986 | left/right axis specification(GO:0070986) |
0.8 | 8.7 | GO:0002826 | negative regulation of T-helper 1 type immune response(GO:0002826) |
1.3 | 7.6 | GO:0030241 | skeletal muscle myosin thick filament assembly(GO:0030241) |
2.3 | 6.8 | GO:0046005 | positive regulation of circadian sleep/wake cycle, REM sleep(GO:0046005) |
1.1 | 6.6 | GO:0031133 | regulation of axon diameter(GO:0031133) |
0.1 | 5.1 | GO:0006471 | protein ADP-ribosylation(GO:0006471) |
0.1 | 5.0 | GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter(GO:0048791) |
0.2 | 4.7 | GO:0050901 | leukocyte tethering or rolling(GO:0050901) |
1.5 | 4.6 | GO:1904732 | elastin biosynthetic process(GO:0051542) regulation of electron carrier activity(GO:1904732) regulation of cytochrome-c oxidase activity(GO:1904959) |
0.6 | 3.5 | GO:0034441 | plasma lipoprotein particle oxidation(GO:0034441) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.1 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 8.7 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 8.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.2 | 7.6 | GO:0005865 | striated muscle thin filament(GO:0005865) |
0.0 | 5.2 | GO:0005813 | centrosome(GO:0005813) |
0.5 | 4.9 | GO:0008290 | F-actin capping protein complex(GO:0008290) |
0.0 | 4.4 | GO:0005874 | microtubule(GO:0005874) |
0.1 | 4.1 | GO:0030140 | trans-Golgi network transport vesicle(GO:0030140) |
0.2 | 3.5 | GO:0034362 | low-density lipoprotein particle(GO:0034362) |
0.0 | 3.5 | GO:0070382 | exocytic vesicle(GO:0070382) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.9 | 8.7 | GO:0002113 | interleukin-33 binding(GO:0002113) |
0.4 | 7.6 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.1 | 6.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.2 | 5.7 | GO:0071855 | neuropeptide receptor binding(GO:0071855) |
0.1 | 5.4 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.1 | 5.0 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
0.1 | 4.7 | GO:0030507 | spectrin binding(GO:0030507) |
1.1 | 4.6 | GO:0043682 | copper-exporting ATPase activity(GO:0004008) copper-transporting ATPase activity(GO:0043682) |
0.0 | 4.2 | GO:0031625 | ubiquitin protein ligase binding(GO:0031625) |
0.1 | 3.9 | GO:0034237 | protein kinase A regulatory subunit binding(GO:0034237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 2.4 | PID ARF6 PATHWAY | Arf6 signaling events |
0.0 | 2.1 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 2.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.0 | 1.8 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.0 | 1.7 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 1.6 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 1.5 | PID CDC42 PATHWAY | CDC42 signaling events |
0.0 | 1.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 1.4 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.6 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.0 | 7.0 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 4.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.3 | 4.3 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 3.9 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.0 | 3.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.2 | 3.5 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.2 | 3.3 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.1 | 2.1 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 2.0 | REACTOME AMINE LIGAND BINDING RECEPTORS | Genes involved in Amine ligand-binding receptors |