avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Pitx2 | mm10_v2_chr3_+_129199919_129199943 | 0.62 | 6.1e-05 | Click! |
Otx2 | mm10_v2_chr14_-_48662740_48662872 | 0.24 | 1.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_36184082 Show fit | 30.10 |
ENSMUST00000114858.1
|
predicted gene 5483 |
|
chr16_-_36367623 Show fit | 27.57 |
ENSMUST00000096089.2
|
cDNA sequence BC100530 |
|
chr14_-_70630149 Show fit | 17.93 |
ENSMUST00000022694.9
|
dematin actin binding protein |
|
chrX_-_7978027 Show fit | 16.81 |
ENSMUST00000125418.1
|
GATA binding protein 1 |
|
chr5_+_90490714 Show fit | 15.58 |
ENSMUST00000042755.3
|
alpha fetoprotein |
|
chr2_-_126500631 Show fit | 15.04 |
ENSMUST00000129187.1
|
ATPase, class I, type 8B, member 4 |
|
chr16_+_36277145 Show fit | 14.88 |
ENSMUST00000042097.9
|
stefin A1 |
|
chrX_-_7967817 Show fit | 14.50 |
ENSMUST00000033502.7
|
GATA binding protein 1 |
|
chr10_+_79886302 Show fit | 14.14 |
ENSMUST00000046091.5
|
elastase, neutrophil expressed |
|
chr6_-_88898664 Show fit | 13.92 |
ENSMUST00000058011.6
|
minichromosome maintenance deficient 2 mitotin (S. cerevisiae) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
10.4 | 31.3 | GO:0030221 | basophil differentiation(GO:0030221) |
0.6 | 22.1 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
5.3 | 21.2 | GO:0035524 | proline transmembrane transport(GO:0035524) |
0.7 | 18.7 | GO:0032460 | negative regulation of protein oligomerization(GO:0032460) |
6.0 | 17.9 | GO:0035585 | calcium-mediated signaling using extracellular calcium source(GO:0035585) |
1.0 | 15.6 | GO:0001542 | ovulation from ovarian follicle(GO:0001542) |
0.3 | 14.4 | GO:0043029 | T cell homeostasis(GO:0043029) |
4.7 | 14.1 | GO:0070947 | neutrophil mediated killing of fungus(GO:0070947) |
1.4 | 13.9 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
3.4 | 13.8 | GO:0035054 | embryonic heart tube anterior/posterior pattern specification(GO:0035054) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 72.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.4 | 42.6 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.5 | 36.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.4 | 20.3 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
2.4 | 19.3 | GO:0000808 | origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664) |
4.5 | 17.9 | GO:0031095 | platelet dense tubular network membrane(GO:0031095) |
0.9 | 16.8 | GO:0005652 | nuclear lamina(GO:0005652) |
0.8 | 16.6 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.1 | 16.5 | GO:0031965 | nuclear membrane(GO:0031965) |
0.1 | 15.8 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 46.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
2.0 | 31.7 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.0 | 18.9 | GO:0050839 | cell adhesion molecule binding(GO:0050839) |
0.3 | 16.9 | GO:0030507 | spectrin binding(GO:0030507) |
1.7 | 16.6 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
3.9 | 15.6 | GO:0004566 | beta-glucuronidase activity(GO:0004566) |
0.4 | 14.3 | GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding(GO:0043325) |
0.4 | 14.1 | GO:0001106 | RNA polymerase II transcription corepressor activity(GO:0001106) |
1.0 | 13.9 | GO:0003688 | DNA replication origin binding(GO:0003688) |
2.0 | 13.7 | GO:0016936 | galactoside binding(GO:0016936) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 50.1 | PID P73PATHWAY | p73 transcription factor network |
0.5 | 25.5 | PID ATR PATHWAY | ATR signaling pathway |
0.1 | 21.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.4 | 15.8 | PID AURORA A PATHWAY | Aurora A signaling |
0.3 | 14.3 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.2 | 12.2 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 11.4 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.7 | 11.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.4 | 11.2 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.2 | 11.0 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 48.4 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.8 | 39.3 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.3 | 33.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.4 | 21.5 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
1.1 | 18.4 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.6 | 17.8 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.8 | 17.7 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.3 | 17.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.4 | 16.6 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
1.0 | 15.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |