avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Pitx3 | mm10_v2_chr19_-_46148369_46148386 | 0.36 | 3.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_181051232 Show fit | 8.08 |
ENSMUST00000036819.6
|
RIKEN cDNA 9130409I23 gene |
|
chr9_+_119357381 Show fit | 7.02 |
ENSMUST00000039610.8
|
xylulokinase homolog (H. influenzae) |
|
chr8_-_72212837 Show fit | 6.67 |
ENSMUST00000098630.3
|
calcium and integrin binding family member 3 |
|
chr8_+_114133557 Show fit | 6.48 |
ENSMUST00000073521.5
ENSMUST00000066514.6 |
nudix (nucleoside diphosphate linked moiety X)-type motif 7 |
|
chr17_-_12675833 Show fit | 6.36 |
ENSMUST00000024596.8
|
solute carrier family 22 (organic cation transporter), member 1 |
|
chr8_+_114133601 Show fit | 6.27 |
ENSMUST00000109109.1
|
nudix (nucleoside diphosphate linked moiety X)-type motif 7 |
|
chr15_+_9335550 Show fit | 6.20 |
ENSMUST00000072403.6
|
UDP glycosyltransferases 3 family, polypeptide A2 |
|
chr8_+_114133635 Show fit | 6.17 |
ENSMUST00000147605.1
ENSMUST00000134593.1 |
nudix (nucleoside diphosphate linked moiety X)-type motif 7 |
|
chr7_+_26835305 Show fit | 5.54 |
ENSMUST00000005685.8
|
cytochrome P450, family 2, subfamily a, polypeptide 5 |
|
chr10_+_88459569 Show fit | 5.52 |
ENSMUST00000020252.3
ENSMUST00000125612.1 |
synaptonemal complex protein 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.7 | 18.9 | GO:0034031 | coenzyme A catabolic process(GO:0015938) nucleoside bisphosphate catabolic process(GO:0033869) ribonucleoside bisphosphate catabolic process(GO:0034031) purine nucleoside bisphosphate catabolic process(GO:0034034) acetyl-CoA catabolic process(GO:0046356) |
0.5 | 14.4 | GO:0080184 | response to phenylpropanoid(GO:0080184) |
3.1 | 9.4 | GO:0042732 | D-xylose metabolic process(GO:0042732) |
0.1 | 6.6 | GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) |
1.5 | 6.0 | GO:0046951 | ketone body biosynthetic process(GO:0046951) |
1.5 | 5.8 | GO:0010248 | establishment or maintenance of transmembrane electrochemical gradient(GO:0010248) |
1.4 | 5.5 | GO:0000711 | meiotic DNA repair synthesis(GO:0000711) |
0.9 | 5.5 | GO:0002317 | plasma cell differentiation(GO:0002317) |
0.4 | 5.2 | GO:0045721 | negative regulation of gluconeogenesis(GO:0045721) |
1.0 | 5.1 | GO:0001692 | histamine metabolic process(GO:0001692) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 22.6 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 13.0 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 11.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 10.0 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.0 | 9.3 | GO:0030018 | Z disc(GO:0030018) |
0.1 | 7.8 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
0.3 | 6.8 | GO:0034385 | very-low-density lipoprotein particle(GO:0034361) triglyceride-rich lipoprotein particle(GO:0034385) |
0.0 | 5.1 | GO:0030496 | midbody(GO:0030496) |
0.6 | 5.0 | GO:0033269 | internode region of axon(GO:0033269) |
0.0 | 4.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.8 | 18.9 | GO:0003986 | acetyl-CoA hydrolase activity(GO:0003986) |
0.3 | 11.6 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.2 | 8.8 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
2.0 | 8.1 | GO:0042284 | sphingolipid delta-4 desaturase activity(GO:0042284) |
0.0 | 7.3 | GO:0008022 | protein C-terminus binding(GO:0008022) |
2.1 | 6.4 | GO:0005333 | norepinephrine transmembrane transporter activity(GO:0005333) |
0.5 | 6.0 | GO:0031957 | very long-chain fatty acid-CoA ligase activity(GO:0031957) |
0.0 | 5.7 | GO:0000287 | magnesium ion binding(GO:0000287) |
0.1 | 5.4 | GO:0008170 | N-methyltransferase activity(GO:0008170) |
0.8 | 4.9 | GO:0061629 | RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.1 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 5.0 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 4.4 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.0 | 3.4 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 3.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 2.9 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 2.7 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 2.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 1.6 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.1 | 1.4 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.0 | REACTOME AMINE LIGAND BINDING RECEPTORS | Genes involved in Amine ligand-binding receptors |
0.5 | 6.7 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.5 | 6.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.7 | 6.0 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.4 | 5.9 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |
0.1 | 5.2 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.2 | 4.8 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
0.3 | 4.4 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.2 | 4.1 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |
0.2 | 3.6 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |