avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Prdm1 | mm10_v2_chr10_-_44458715_44458751 | -0.56 | 4.1e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_77729091 Show fit | 11.02 |
ENSMUST00000109775.2
|
apolipoprotein L 9b |
|
chr8_+_70083509 Show fit | 8.71 |
ENSMUST00000007738.9
|
hyaluronan and proteoglycan link protein 4 |
|
chr6_-_55175019 Show fit | 7.78 |
ENSMUST00000003569.5
|
indolethylamine N-methyltransferase |
|
chr11_-_5950018 Show fit | 7.42 |
ENSMUST00000102920.3
|
glucokinase |
|
chr5_+_30921825 Show fit | 7.08 |
ENSMUST00000117435.1
|
ketohexokinase |
|
chr5_+_30921867 Show fit | 6.77 |
ENSMUST00000123885.1
|
ketohexokinase |
|
chr5_+_30921556 Show fit | 6.67 |
ENSMUST00000031053.8
|
ketohexokinase |
|
chr4_-_42756543 Show fit | 6.27 |
ENSMUST00000102957.3
|
chemokine (C-C motif) ligand 19 |
|
chr1_-_139608282 Show fit | 5.89 |
ENSMUST00000170441.2
|
complement factor H-related 3 |
|
chr19_-_11050500 Show fit | 5.39 |
ENSMUST00000099676.4
|
expressed sequence AW112010 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.1 | 20.5 | GO:0009744 | fructose catabolic process(GO:0006001) response to sucrose(GO:0009744) response to disaccharide(GO:0034285) fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate(GO:0061624) glycolytic process through fructose-1-phosphate(GO:0061625) |
0.2 | 11.8 | GO:0071346 | cellular response to interferon-gamma(GO:0071346) |
3.3 | 10.0 | GO:1990166 | protein localization to site of double-strand break(GO:1990166) |
2.7 | 8.2 | GO:2000547 | regulation of dendritic cell dendrite assembly(GO:2000547) |
0.0 | 8.1 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.2 | 7.8 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
1.5 | 7.4 | GO:0051594 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
0.0 | 7.4 | GO:0001501 | skeletal system development(GO:0001501) |
0.0 | 7.1 | GO:0009636 | response to toxic substance(GO:0009636) |
0.3 | 6.1 | GO:0021707 | cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 28.7 | GO:0005615 | extracellular space(GO:0005615) |
0.2 | 9.9 | GO:0035861 | site of double-strand break(GO:0035861) |
0.5 | 7.4 | GO:0045180 | basal cortex(GO:0045180) |
0.0 | 6.5 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.5 | 4.1 | GO:0033269 | internode region of axon(GO:0033269) |
0.3 | 3.9 | GO:0044322 | endoplasmic reticulum quality control compartment(GO:0044322) |
0.0 | 3.9 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.2 | 3.5 | GO:0031045 | dense core granule(GO:0031045) |
0.2 | 3.3 | GO:0045179 | apical cortex(GO:0045179) |
0.2 | 3.0 | GO:0031315 | extrinsic component of mitochondrial outer membrane(GO:0031315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.8 | 20.5 | GO:0004454 | ketohexokinase activity(GO:0004454) |
0.4 | 13.0 | GO:0008009 | chemokine activity(GO:0008009) |
1.1 | 10.0 | GO:0003910 | DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910) |
0.3 | 8.4 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.4 | 8.1 | GO:0003841 | 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) |
1.3 | 7.8 | GO:0008172 | S-methyltransferase activity(GO:0008172) |
0.7 | 7.4 | GO:0004396 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) |
1.6 | 6.3 | GO:0031735 | CCR10 chemokine receptor binding(GO:0031735) |
0.1 | 5.6 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
1.3 | 5.2 | GO:0016823 | hydrolase activity, acting on acid carbon-carbon bonds(GO:0016822) hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances(GO:0016823) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 8.4 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 7.1 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 5.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 4.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 3.5 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.1 | 2.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
0.1 | 2.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 2.2 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 2.1 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.6 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
0.2 | 9.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.2 | 8.1 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.5 | 7.5 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.4 | 7.4 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.2 | 7.2 | REACTOME REGULATION OF GLUCOKINASE BY GLUCOKINASE REGULATORY PROTEIN | Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein |
0.1 | 4.6 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
0.2 | 4.1 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
0.1 | 4.1 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 3.9 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |