avrg: GSE58827: Dynamics of the Mouse Liver

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Prdm4 Links Ensembl NCBI MGI UniProt	ENSMUSG00000035529.9	PR domain containing 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Prdm4	mm10_v2_chr10_-_85916902_85917006	-0.34	3.9e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_44198191 Show fit	0.51	ENSMUST00000085450.2	Klk1b3 Links Ensembl NCBI MGI UniProt Show fit	kallikrein 1-related peptidase b3
chr11_-_69369377 Show fit	0.36	ENSMUST00000092971.6 ENSMUST00000108661.1	Chd3 Links Ensembl NCBI MGI UniProt Show fit	chromodomain helicase DNA binding protein 3
chr2_+_97467657 Show fit	0.34	ENSMUST00000059049.7	Lrrc4c Links Ensembl NCBI MGI UniProt Show fit	leucine rich repeat containing 4C
chr8_+_27042555 Show fit	0.33	ENSMUST00000033875.8 ENSMUST00000098851.4	Prosc Links Ensembl NCBI MGI UniProt Show fit	proline synthetase co-transcribed
chr10_+_26822560 Show fit	0.32	ENSMUST00000135866.1	Arhgap18 Links Ensembl NCBI MGI UniProt Show fit	Rho GTPase activating protein 18
chrX_+_21714896 Show fit	0.31	ENSMUST00000033414.7	Slc6a14 Links Ensembl NCBI MGI UniProt Show fit	solute carrier family 6 (neurotransmitter transporter), member 14
chr18_+_42053692 Show fit	0.29	ENSMUST00000074679.3	Sh3rf2 Links Ensembl NCBI MGI UniProt Show fit	SH3 domain containing ring finger 2
chr11_-_43836243 Show fit	0.29	ENSMUST00000167574.1	Adra1b Links Ensembl NCBI MGI UniProt Show fit	adrenergic receptor, alpha 1b
chr5_-_144965793 Show fit	0.26	ENSMUST00000110677.1 ENSMUST00000085684.4 ENSMUST00000100461.2	Smurf1 Links Ensembl NCBI MGI UniProt Show fit	SMAD specific E3 ubiquitin protein ligase 1
chr5_-_142817654 Show fit	0.25	ENSMUST00000151477.1	Tnrc18 Links Ensembl NCBI MGI UniProt Show fit	trinucleotide repeat containing 18
chr1_+_74391479 Show fit	0.24	ENSMUST00000027367.7	Ctdsp1 Links Ensembl NCBI MGI UniProt Show fit	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
chr18_+_42053648 Show fit	0.23	ENSMUST00000072008.4	Sh3rf2 Links Ensembl NCBI MGI UniProt Show fit	SH3 domain containing ring finger 2
chr3_+_37348645 Show fit	0.23	ENSMUST00000038885.3	Fgf2 Links Ensembl NCBI MGI UniProt Show fit	fibroblast growth factor 2
chr5_-_142817387 Show fit	0.21	ENSMUST00000036253.6	Tnrc18 Links Ensembl NCBI MGI UniProt Show fit	trinucleotide repeat containing 18
chr7_+_43975963 Show fit	0.15	ENSMUST00000081399.3	Klk1b9 Links Ensembl NCBI MGI UniProt Show fit	kallikrein 1-related peptidase b9
chr15_-_99474696 Show fit	0.12	ENSMUST00000040313.4	Bcdin3d Links Ensembl NCBI MGI UniProt Show fit	BCDIN3 domain containing
chr12_+_51377560 Show fit	0.08	ENSMUST00000021335.5	Scfd1 Links Ensembl NCBI MGI UniProt Show fit	Sec1 family domain containing 1
chr7_+_43966739 Show fit	0.08	ENSMUST00000078835.2	Klk1b1 Links Ensembl NCBI MGI UniProt Show fit	kallikrein 1-related peptidase b1
chr10_+_126978690 Show fit	0.02	ENSMUST00000105256.2	Ctdsp2 Links Ensembl NCBI MGI UniProt Show fit	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
chrX_-_7605374 Show fit	0.01	ENSMUST00000033483.4	Ccdc22 Links Ensembl NCBI MGI UniProt Show fit	coiled-coil domain containing 22

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0001982	baroreceptor response to decreased systemic arterial blood pressure(GO:0001982)
0.1	0.3	GO:0071211	protein targeting to vacuole involved in autophagy(GO:0071211)
0.1	0.2	GO:0060128	corticotropin hormone secreting cell differentiation(GO:0060128)
0.0	0.5	GO:0031507	heterochromatin assembly(GO:0031507)
0.0	0.1	GO:0003220	left ventricular cardiac muscle tissue morphogenesis(GO:0003220)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	GO:0005677	chromatin silencing complex(GO:0005677)
0.0	0.4	GO:0090545	NuRD complex(GO:0016581) CHD-type complex(GO:0090545)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0004937	alpha1-adrenergic receptor activity(GO:0004937)
0.1	0.3	GO:0005275	amine transmembrane transporter activity(GO:0005275)
0.0	0.3	GO:0008420	CTD phosphatase activity(GO:0008420)
0.0	0.5	GO:0008157	protein phosphatase 1 binding(GO:0008157)
0.0	0.3	GO:0070411	I-SMAD binding(GO:0070411)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS	Genes involved in Na+/Cl- dependent neurotransmitter transporters
0.0	0.2	REACTOME FGFR4 LIGAND BINDING AND ACTIVATION	Genes involved in FGFR4 ligand binding and activation
0.0	0.3	REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION	Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)