avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Rfx2 | mm10_v2_chr17_-_56830916_56831008 | 0.57 | 2.9e-04 | Click! |
Rfx7 | mm10_v2_chr9_+_72532609_72532828 | 0.28 | 9.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_44468020 Show fit | 5.04 |
ENSMUST00000117324.1
ENSMUST00000120852.1 ENSMUST00000118628.1 |
Josephin domain containing 2 |
|
chr7_+_44468051 Show fit | 4.70 |
ENSMUST00000118493.1
|
Josephin domain containing 2 |
|
chr7_+_44467980 Show fit | 3.53 |
ENSMUST00000035844.4
|
Josephin domain containing 2 |
|
chr1_-_131138232 Show fit | 2.57 |
ENSMUST00000016670.7
|
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 |
|
chr10_-_62422427 Show fit | 2.37 |
ENSMUST00000020277.8
|
hexokinase domain containing 1 |
|
chr17_+_25471564 Show fit | 2.24 |
ENSMUST00000025002.1
|
tektin 4 |
|
chr11_-_53480178 Show fit | 2.17 |
ENSMUST00000104955.2
|
sosondowah ankyrin repeat domain family member A |
|
chr4_+_134864536 Show fit | 1.93 |
ENSMUST00000030627.7
|
Rh blood group, D antigen |
|
chr9_+_72438519 Show fit | 1.88 |
ENSMUST00000184604.1
|
meiosis-specific nuclear structural protein 1 |
|
chr8_+_39005880 Show fit | 1.87 |
ENSMUST00000169034.1
|
tumor suppressor candidate 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.9 | GO:0016579 | protein deubiquitination(GO:0016579) |
0.2 | 3.4 | GO:0015693 | magnesium ion transport(GO:0015693) |
0.2 | 3.3 | GO:0070986 | left/right axis specification(GO:0070986) |
0.4 | 3.1 | GO:0071907 | determination of digestive tract left/right asymmetry(GO:0071907) |
0.4 | 3.0 | GO:0035735 | intraciliary transport involved in cilium morphogenesis(GO:0035735) |
0.5 | 2.9 | GO:0034441 | plasma lipoprotein particle oxidation(GO:0034441) |
0.5 | 2.6 | GO:0035617 | stress granule disassembly(GO:0035617) |
0.4 | 2.2 | GO:0080154 | regulation of fertilization(GO:0080154) |
0.6 | 1.9 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
0.5 | 1.9 | GO:0046898 | response to cycloheximide(GO:0046898) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | GO:0036126 | sperm flagellum(GO:0036126) |
0.1 | 4.4 | GO:0097228 | sperm principal piece(GO:0097228) |
0.2 | 3.4 | GO:0008250 | oligosaccharyltransferase complex(GO:0008250) |
0.1 | 3.2 | GO:0034451 | centriolar satellite(GO:0034451) |
0.1 | 2.9 | GO:0034362 | low-density lipoprotein particle(GO:0034362) |
0.0 | 2.6 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.2 | 1.9 | GO:0097136 | Bcl-2 family protein complex(GO:0097136) |
0.0 | 1.9 | GO:0031514 | motile cilium(GO:0031514) |
0.1 | 1.8 | GO:0046540 | U4/U6 x U5 tri-snRNP complex(GO:0046540) |
0.0 | 1.7 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.3 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) |
0.3 | 3.4 | GO:0004579 | oligosaccharyl transferase activity(GO:0004576) dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579) |
0.3 | 2.9 | GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity(GO:0003847) calcium-independent phospholipase A2 activity(GO:0047499) |
0.3 | 2.4 | GO:0008865 | fructokinase activity(GO:0008865) mannokinase activity(GO:0019158) |
0.1 | 2.4 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
0.2 | 1.9 | GO:0051434 | BH3 domain binding(GO:0051434) |
0.1 | 1.9 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.2 | 1.7 | GO:0003689 | DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170) |
0.1 | 1.5 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.2 | 1.4 | GO:0047184 | 1-acylglycerophosphocholine O-acyltransferase activity(GO:0047184) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.9 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 1.9 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 1.9 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.1 | 1.2 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.0 | 1.2 | PID P53 REGULATION PATHWAY | p53 pathway |
0.0 | 1.1 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.0 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 0.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.6 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 0.4 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.0 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.0 | 2.1 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |
0.1 | 1.9 | REACTOME INFLAMMASOMES | Genes involved in Inflammasomes |
0.0 | 1.8 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 1.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.1 | 1.4 | REACTOME ACYL CHAIN REMODELLING OF PE | Genes involved in Acyl chain remodelling of PE |
0.0 | 1.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.0 | 1.2 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
0.1 | 1.1 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
0.1 | 1.1 | REACTOME RESOLUTION OF AP SITES VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the single-nucleotide replacement pathway |