avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Rfx5 | mm10_v2_chr3_+_94954075_94954226 | 0.01 | 9.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_19692596 Show fit | 3.68 |
ENSMUST00000108451.2
ENSMUST00000045035.4 |
apolipoprotein C-I |
|
chr5_-_145879857 Show fit | 2.83 |
ENSMUST00000035918.7
|
cytochrome P450, family 3, subfamily a, polypeptide 11 |
|
chr17_+_34305883 Show fit | 2.42 |
ENSMUST00000074557.8
|
histocompatibility 2, class II antigen E beta |
|
chr17_+_34263209 Show fit | 2.26 |
ENSMUST00000040828.5
|
histocompatibility 2, class II antigen A, beta 1 |
|
chr18_+_60803838 Show fit | 1.92 |
ENSMUST00000050487.8
ENSMUST00000097563.2 ENSMUST00000167610.1 |
CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) |
|
chr1_+_88211956 Show fit | 1.90 |
ENSMUST00000073049.6
|
UDP glucuronosyltransferase 1 family, polypeptide A1 |
|
chr17_+_34153072 Show fit | 1.69 |
ENSMUST00000114232.2
|
histocompatibility 2, class II, locus Mb1 |
|
chr2_-_28563362 Show fit | 1.62 |
ENSMUST00000028161.5
|
carboxyl ester lipase |
|
chr17_+_34187545 Show fit | 1.52 |
ENSMUST00000170086.1
|
transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) |
|
chr17_-_34187219 Show fit | 1.49 |
ENSMUST00000173831.1
|
proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 7.5 | GO:0019886 | antigen processing and presentation of exogenous peptide antigen via MHC class II(GO:0019886) |
0.0 | 3.7 | GO:0006641 | triglyceride metabolic process(GO:0006641) |
0.1 | 3.5 | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I(GO:0002474) |
0.6 | 3.0 | GO:0046967 | cytosol to ER transport(GO:0046967) |
0.2 | 2.9 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.1 | 2.9 | GO:0019882 | antigen processing and presentation(GO:0019882) |
0.1 | 2.8 | GO:0001539 | cilium or flagellum-dependent cell motility(GO:0001539) cilium-dependent cell motility(GO:0060285) |
0.0 | 2.7 | GO:0007520 | myoblast fusion(GO:0007520) adipose tissue development(GO:0060612) |
0.8 | 2.3 | GO:0002343 | peripheral B cell selection(GO:0002343) B cell affinity maturation(GO:0002344) |
1.0 | 2.0 | GO:0002481 | antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 11.5 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.4 | 5.5 | GO:0042611 | MHC protein complex(GO:0042611) |
0.1 | 3.7 | GO:0034361 | very-low-density lipoprotein particle(GO:0034361) triglyceride-rich lipoprotein particle(GO:0034385) |
0.1 | 3.4 | GO:0030992 | intraciliary transport particle B(GO:0030992) |
0.4 | 3.0 | GO:0042825 | TAP complex(GO:0042825) |
0.6 | 2.9 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.1 | 1.9 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
0.1 | 1.6 | GO:0042588 | zymogen granule(GO:0042588) |
0.0 | 0.8 | GO:0031528 | microvillus membrane(GO:0031528) |
0.1 | 0.6 | GO:0035749 | myelin sheath adaxonal region(GO:0035749) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.8 | GO:0023026 | MHC class II protein complex binding(GO:0023026) |
0.6 | 3.0 | GO:0015433 | peptide antigen-transporting ATPase activity(GO:0015433) tapasin binding(GO:0046980) |
0.1 | 2.9 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.4 | 2.8 | GO:0050649 | testosterone 6-beta-hydroxylase activity(GO:0050649) |
0.2 | 2.7 | GO:0046977 | TAP binding(GO:0046977) |
0.0 | 2.7 | GO:0004712 | protein serine/threonine/tyrosine kinase activity(GO:0004712) |
0.2 | 2.3 | GO:1990405 | protein antigen binding(GO:1990405) |
0.1 | 1.9 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.5 | 1.6 | GO:0050253 | sterol esterase activity(GO:0004771) retinyl-palmitate esterase activity(GO:0050253) |
0.1 | 1.4 | GO:0031702 | type 1 angiotensin receptor binding(GO:0031702) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 1.4 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 1.4 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
0.2 | 3.0 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.1 | 1.9 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.5 | 1.4 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.1 | 1.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 0.8 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 0.6 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |
0.0 | 0.6 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 0.3 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
0.0 | 0.3 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |